FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSV-----ITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            NL +T L D  V    K+  F+GW MP+Q+   + +     R +  +FD+SHM   +L+G + +  L+ LV +D+  L PG    TV  N  GG IDD +     IT+  +    ++VNAG  +KD   + +H+ +      D+S     E+ L+A+QGP
Sbjct:    3 NLLRTPLFDLIVQQKAKLTEFSGWEMPVQFS-KLKDEHQAVRTDVGMFDISHMGKFALQGTELLKSLQFLVPSDLERLQPGQAQYTVLLNPQGGIIDDIIVYYQGITETGEQRANIIVNAGTTEKDKTWLLSHLDTQKITFKDLS----GEKVLIAVQGP 157          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACV8 (Aminomethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG + + FL+++   +VA L  G    T F NE GG +DD ++   + +   LVVNA   +KD     +H       G ++  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTETHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNAVG-VFDVSHMGEFWVKGPNALEFLQQVTSNNVATLPVGKAQYTCFPNEEGGIVDDLLVYHYESEKYLLVVNAANIEKDWNWCVSH----NTVGAELE-NASDRMAQLAIQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NEIMA (Aminomethyltransferase OS=Neisseria meningitidis serogroup A GN=gcvT PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 57/159 (35.85%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVI--TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK T  H  H   G K+V FAGW +PI Y   I E     R +  +FDVSHM    + G +   F  KL+  DVA LA  G    +   N+NGG IDD ++  T   +    +V N   R+KD A      + F      VS++   +  +LA+QGP A
Sbjct:    4 LKTTPFHQAHQDAGAKLVDFAGWELPIHYGSQIAEHEA-VRTDAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLIVYRTNEAETQYRIVSNGATREKDTAQFHKVGQEF-----GVSFNPRYDLGMLAVQGPKA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANCP (Aminomethyltransferase OS=Xanthomonas campestris pv. campestris GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y   I E     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  ++++   LVVNA  RDKDL  I      F     +V      + +++A+QGP A
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHYGSQIDEHH-QVRRDAGMFDVSHMTVVDLHGVRVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYFMQEEFFRLVVNAATRDKDLQWIGEQAARF-----EVRVKERADFAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XANC8 (Aminomethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H A G KMV F GW MPI Y   I E     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  ++++   LVVNA  RDKDL  I      F     +V      + +++A+QGP A
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHYGSQIDEHH-QVRRDAGMFDVSHMTVVDLHGVRVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYFMQEEFFRLVVNAATRDKDLQWIGEQAARF-----EVRVKERADFAMIAVQGPNA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HERA2 (Aminomethyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K+T L+  H A G +MV F GW MP+QY   I E     R+   LFD+SHM    + G D   F++ +   D++  A G     +   E+GG +DD     +  D   +V NAG  +KD A +  H   +     D S     E +++ALQGP A
Sbjct:    1 MKQTPLNARHRALGARMVEFGGWDMPVQYAGIIAEHKAT-REGAGLFDISHMARFWVTGPDSERFIQLIDTFDISKTAIGQSDYGIMCYEDGGIVDDIFTYHLGPDEWMVVANAGNAEKDWAWLNQHTAGYDVVLTDRS----QELAMIALQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PARD8 (Aminomethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   D H+A G KM  FAG++MPI+Y   I++  +       +FDVSHM    +KG + + F++ +   D + L  G    T F N+ GG +DD ++   + +   LVVNAG  DKD     +H       G ++  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGFNMPIEYS-GIIDEHMTVVNGVGVFDVSHMGEFWVKGPNALAFIQSVTSNDASVLPLGKAQYTCFPNDKGGIVDDLLVYHYEPEKYLLVVNAGNIDKDWEWCVSH----NTVGAELE-NSSDRTAQLAIQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NEIMB (Aminomethyltransferase OS=Neisseria meningitidis serogroup B GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 56/159 (35.22%), Postives = 77/159 (48.43%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVI--TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK T  H  H   G K+V FAGW +PI Y   I E     R +  +FDVSHM    + G +   F  KL+  DVA LA  G    +   N+NGG IDD ++  T   +    +V N   R+KD A      + F      V+++   +  +LA+QGP A
Sbjct:    4 LKTTPFHQAHQDAGAKLVDFAGWELPIHYGSQIAEHEA-VRTDAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLIVYRTNEAETQYRIVSNGATREKDTAQFHKVGQEF-----GVAFNPRYDLGMLAVQGPKA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 55/157 (35.03%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KKT L++ H   G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          N+NGG +DD  I K   +   +  NA   +    H+  H+     K  + S   H     +ALQGP A
Sbjct:    5 KKTPLYETHRTLGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGNPKSILLFLESITCNSVASLSDFQVQYNAILNQNGGLVDDVTIYKFSSEKYMICSNASNYEAVTEHLLEHLPISGVKVDNQSLQWHQ----IALQGPKA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 55/157 (35.03%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KKT L++ H   G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          N+NGG +DD  I K   +   +  NA   +    H+  H+     K  + S   H     +ALQGP A
Sbjct:    5 KKTPLYETHRTLGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGNPKSILLFLESITCNSVASLSDFQVQYNAILNQNGGLVDDVTIYKFSSEKYMICSNASNYEAVTEHLLEHLPISGVKVDNQSLQWHQ----IALQGPKA 156          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_CYAP85.787e-1733.13Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]
GCST_BACV85.787e-1735.90Aminomethyltransferase OS=Bacteroides vulgatus (st... [more]
GCST_NEIMA9.872e-1735.85Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_XANCP1.289e-1637.82Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_XANC81.289e-1637.82Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_HERA21.289e-1633.97Aminomethyltransferase OS=Herpetosiphon aurantiacu... [more]
GCST_PARD82.199e-1633.97Aminomethyltransferase OS=Parabacteroides distason... [more]
GCST_NEIMB2.199e-1635.22Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_LEPIN2.199e-1635.03Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC2.199e-1635.03Aminomethyltransferase OS=Leptospira interrogans s... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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