FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURP8 (Aminomethyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G+    F E+ +  +V  L   G    +   N  GG IDD ++    +DH  +VVNAG  +KD+A      K    +G  ++     + +++A+QGP A
Sbjct:    4 LKHTPLHATHRALNARMVDFGGWDMPVNYGSQIEEHRA-VRTDAGMFDVSHMCVVDFTGERVRAFFERALANNVGKLQTAGKALYSCLLNPQGGVIDDLIVYYFGEDHFRVVVNAGTAEKDIAWFN---KLNDEEGFGLTITPRRDYAIVAVQGPNA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RALPJ (Aminomethyltransferase OS=Ralstonia pickettii (strain 12J) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 63/167 (37.72%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERS----------LLALQGPLA 685
            L+ T L+  H + G +MV F GW MP+ Y   I E     RQ+  +FDVSHMC + L G     FL  L+  +V  L  PG    +   N  GG IDD ++   ++D   LVVNAG    DL  I A      A G DV+  I   RS          +LA+QGP A
Sbjct:    3 LQHTPLNAIHRSLGARMVDFGGWDMPVNYGSQIEEHHA-VRQDAGVFDVSHMCVVDLTGARVRDFLRGLLANNVDKLQTPGKALYSCMLNPKGGVIDDLIVYFFREDWFRLVVNAGTAPTDLEWIVAQN---AAAGTDVT--ITPRRSDNNAGAEPLGILAVQGPNA 163          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RALME (Aminomethyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVSWHIHDERSLLALQGPLA 685
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G     FL  L+  ++  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I++         + T + GD++     + +++A+QGP A
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRADAGMFDVSHMCVVDLSGIHARAFLRGLLANNIDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTAVGDIEWIQSRNTATGSGVTITPRRGDLAPACVSKLAIVAVQGPNA 164          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RALEJ (Aminomethyltransferase OS=Ralstonia eutropha (strain JMP134) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 57/163 (34.97%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVSWHIHDERSLLALQGPLA 685
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I A         + T + GDV+       +++A+QGP A
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRSDAGMFDVSHMCVVDLNGANTRAFLRGLLANNVDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTALGDIEWIRARNDATGSGVTITPRRGDVAPAGALPLAIVAVQGPNA 164          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LISMH (Aminomethyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + ++G D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA    KD   +  +++      GDVS  ++  E   LALQGP A
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVEGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTAKDFEWMVKNIQ------GDVSVTNVSSEYGQLALQGPNA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CUPTR (Aminomethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVSWHIHDERSLLALQGPLA 685
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E+GG IDD ++    +D   LVVNAG    D+  I A  +      + T +  DV+       +++A+QGP A
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHHA-VRNDAGMFDVSHMCVVDLAGPNTRAFLRGLLANNVDKLQTPGKALYSCMLDEHGGVIDDLIVYFFAEDRFRLVVNAGTAVGDIDWIRARNEATGSGVTITPRREDVAPAGVPPLAIVAVQGPNA 164          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CORJK (Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LKKTALH  H   G +   F GW MP++Y   + E     R    +FD+SHM  + + G     FL+  +I+ ++ +  G    ++   E+GG IDD +  ++ D+   +V NAG  D  ++ ++   + F  +  + S    D  S++A+QGP A
Sbjct:    4 LKKTALHLVHEKLGARFTDFGGWDMPLKYSSELDEHHA-VRNAVGVFDLSHMGEVRVTGPQAAEFLDHALISKLSAVKVGKAKYSMICTESGGIIDDLITYRLGDNEFLIVPNAGNVDNVVSALQGRTEGFDVEVNNES----DATSMIAVQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_AERHH (Aminomethyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 56/154 (36.36%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQG 676
            ++ T LH  H+  G KMV F GW MPI Y  S +E     R +  +FDVSHM  + L G+    FL+ L+  DVA L   G    +      GG IDD +   + +    LVVN+  R+KDLA I  H + F      V+     E +++A+QG
Sbjct:    2 IQTTVLHPKHLEAGAKMVDFHGWEMPINY-GSQLEEHHQVRTDAGMFDVSHMTIVDLTGERVKAFLQHLLANDVAKLTVFGKALYSGMLTPEGGVIDDLITYYLGETFYRLVVNSATREKDLAWIRHHAQDF-----GVTVTERPELAMIAVQG 149          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NATPD (Probable aminomethyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 52/158 (32.91%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIH---DERSLLALQGP 679
            +L+   L D H   G K+  F GW MP+++ DSI       R++   FD+SHM  + + G D      +L   DVA LAPG  T    T+++G  +DD+V+ ++ D   YL V     D+ +A      +SF A   D++  +    D+ +++ALQGP
Sbjct:    2 SLRTPPLFDAHTDAGAKLTEFGGWEMPVEF-DSIRTEHDAVRESAGKFDISHMGEIEVSGPDAAALTNRLTTNDVASLAPGEATYAGITDDDGVLLDDTVVYRLPDGATYLFVPNAGNDELMAE---RWRSF-ADRWDLAATVDNATDDYAMVALQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   D H+A G KM  FAG++MPI+Y   I++  +N   N  +FDVSHM    +KG + + FL+K+   D + LA G      F N +GG +DD ++ + +++   +V NA    KD A             G +  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGYNMPIEY-GGIIDEHMNVVNNVGVFDVSHMGEFWVKGPNALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDWAWCRQQNTM-----GAILENASDNIAQLAVQGPKA 150          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_BURP82.199e-1634.39Aminomethyltransferase OS=Burkholderia phymatum (s... [more]
GCST_RALPJ4.899e-1637.72Aminomethyltransferase OS=Ralstonia pickettii (str... [more]
GCST_RALME8.357e-1633.13Aminomethyltransferase OS=Ralstonia metallidurans ... [more]
GCST_RALEJ8.357e-1634.97Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]
GCST_LISMH8.357e-1633.12Aminomethyltransferase OS=Listeria monocytogenes s... [more]
GCST_CUPTR8.357e-1634.97Aminomethyltransferase OS=Cupriavidus taiwanensis ... [more]
GCST_CORJK8.357e-1630.77Aminomethyltransferase OS=Corynebacterium jeikeium... [more]
GCST_AERHH8.357e-1636.36Aminomethyltransferase OS=Aeromonas hydrophila sub... [more]
GCST_NATPD1.091e-1532.91Probable aminomethyltransferase OS=Natronomonas ph... [more]
GCST_PORGI1.425e-1533.97Aminomethyltransferase OS=Porphyromonas gingivalis... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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