FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T   D H+A G KM  FAG++MPI+Y   I++  +N   N  +FDVSHM    +KG + + FL+K+   D + LA G      F N +GG +DD ++ + +++   +V NA    KD A             G +  +  D  + LA+QGP A
Sbjct:    1 MKTTPFTDVHIALGAKMHEFAGYNMPIEY-GGIIDEHMNVVNNVGVFDVSHMGEFWVKGPNALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDWAWCRQQNTM-----GAILENASDNIAQLAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURPS (Aminomethyltransferase OS=Burkholderia pseudomallei GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURP6 (Aminomethyltransferase OS=Burkholderia pseudomallei (strain 668) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURP0 (Aminomethyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURMA (Aminomethyltransferase OS=Burkholderia mallei GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURM9 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURM7 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 583
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +VA L  PG    +   N  GG IDD ++    ++   +VVNAG  +KD+A
Sbjct:    4 LKTTPLHAAHRALNARMVDFGGWDMPVNYGSQIEEHQA-VRTDAGMFDVSHMCVVDFTGPRVRAFFEHAIANNVAKLQTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTAEKDIA 125          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURM1 (Aminomethyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 54/158 (34.18%), Postives = 76/158 (48.10%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGG-DVSWHIHDERSLLALQGPLA 685
            LK T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  DKD+    A       +GG  ++     + +++A+QGP A
Sbjct:    4 LKHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRARAFFEYAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTADKDI----AWFNQLNEQGGYGLTIAPRRDFAIVAVQGPNA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNP6 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI--TKVKD--DHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +L  + LH    + G +   FAGW +P+Q++  +M+  L  R+   LFD+SHM    L+G      L++L+ +D+  L PG    +V  NE GG +DD ++    + D  +  +L+VNA   D D   +  H+    A        +  + +L+A+QGP A
Sbjct:    8 SLLSSPLHSVCTSAGARFTGFAGWELPLQFQ-GLMQEHLAVRERAGLFDISHMGKFQLRGSGLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAFLIVNAATTDSDRLWLTEHLPPAIA-----LLDLSQDLALVAIQGPQA 162          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNE7 (Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI--TKVKD--DHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +L  + LH    + G +   FAGW +P+Q++  +M+  L  R+   LFD+SHM    L+G      L++L+ +D+  L PG    +V  NE GG +DD ++    + D  +  +L+VNA   D D   +  H+    A        +  + +L+A+QGP A
Sbjct:    8 SLLSSPLHSVCTSAGARFTGFAGWELPLQFQ-GLMQEHLAVRERAGLFDISHMGKFQLRGSGLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAFLIVNAATTDSDRLWLTEHLPPAIA-----LLDLSQDLALVAIQGPQA 162          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_PORG31.425e-1533.97Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_BURPS1.862e-1538.21Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURP61.862e-1538.21Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURP01.862e-1538.21Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURMA1.862e-1538.21Aminomethyltransferase OS=Burkholderia mallei GN=g... [more]
GCST_BURM91.862e-1538.21Aminomethyltransferase OS=Burkholderia mallei (str... [more]
GCST_BURM71.862e-1538.21Aminomethyltransferase OS=Burkholderia mallei (str... [more]
GCST_BURM12.432e-1534.18Aminomethyltransferase OS=Burkholderia multivorans... [more]
GCST_SYNP63.176e-1530.43Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNE73.176e-1530.43Aminomethyltransferase OS=Synechococcus elongatus ... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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