FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NITEU (Aminomethyltransferase OS=Nitrosomonas europaea GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK T L+  H A   KMV F GW MP+ Y   + E   + R++  +FDVSHM  + + G++   FL  LV  +V  L  PG    T      GG IDD +I  + +    LVVNAG  DKD+  I    +        ++     + +++A+QGP A
Sbjct:    2 LKTTPLNAAHRAMNAKMVDFGGWDMPLHYGSQLDEHH-SVRRDAGMFDVSHMLTVDIHGENVRQFLRGLVANNVDKLTLPGKALYTCMLTPTGGIIDDLIIYFLSESWFRLVVNAGTADKDIDWITGQSRQLAPA---LTITPRRDLAMIAVQGPNA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NITEC (Aminomethyltransferase OS=Nitrosomonas eutropha (strain C91) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 55/157 (35.03%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK T L+  H     KMV F GW MP+ Y   + E     R++  +FDVSHM  + L G++   FL  LV  ++  L  PG    T   N  GG IDD +I  + +    LVVNAG  DKD+  I            D++     + +++A+QGP A
Sbjct:    2 LKTTPLNAAHRGMHAKMVDFGGWDMPLHYGSQLDEHHA-VRRDAGMFDVSHMLTVDLHGENVRQFLRGLVANNIDKLTVPGKALYTCMLNPAGGIIDDLIIYFLSESWFRLVVNAGTADKDIDWITLQSSQHAP---DLTITPRRDLAMIAVQGPNA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RALSO (Aminomethyltransferase OS=Ralstonia solanacearum GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEA 595
            L+ T L+  H + G +MV F GW MP+ Y   I E     R++  +FDVSHMC + L G     FL  L+  ++  L  PG    T   N  GG IDD ++   ++D   LVVNAG    D+  I A
Sbjct:    3 LQHTPLNAIHRSLGARMVDFGGWDMPVNYGSQIEEHHA-VRRDAGIFDVSHMCVVDLTGARVRDFLRGLLANNIDKLQTPGKALYTCMLNPKGGVIDDLIVYFFREDWFRLVVNAGTAPTDIEWITA 128          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_RALEH (Aminomethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK------SFTAKGGDVSWHIHDERSLLALQGPLA 685
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G +   FL  L+  +V  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I A         + T +  DV+       +++A+QGP A
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRTDAGMFDVSHMCVVDLAGANTRSFLRGLLANNVDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTALGDIEWIRARNAATGSDVTITPRREDVAPAGVQPLAIVAVQGPNA 164          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HALHL (Aminomethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 53/159 (33.33%), Postives = 78/159 (49.06%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL--APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI--EAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T L+D HV  G ++V FAGW MP+ Y   + E     R +  LFDVSHM    L G      L + +  DVA L   PG    +   N  GG +DD ++   +D    +V NA  R+K    +  +AH    TA+         D+ +++A+QGP A
Sbjct:    3 QRTPLYDQHVGAGARVVDFAGWEMPLHYGSQLAEHQA-VRSDVGLFDVSHMAVTDLSGPGARALLREQLANDVAKLDGRPGQALYSCLLNGRGGVVDDLIVYLREDASYRVVSNAATREKVRPRLLEQAHAAGVTAEA-------RDDLAMIAVQGPRA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SACEN (Aminomethyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 46/155 (29.68%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            ++T LH+ H A G     FAGW MP++Y     E     R    LFD++HM  + + G      L+  ++A+ + +  G    T+  N  GG +DD ++ ++ +    +V NA       A +   +  F A   DVS    D+ +L+A+QGP A
Sbjct:    5 RQTPLHEIHEALGATFTEFAGWRMPLRYTGDAAEHNA-VRTAAGLFDLTHMGEIRISGPQAPEALDYALVANASAITVGRARYTMICNSEGGVLDDLIVYRLGEQEYLVVANAANAAVVSAELAERVARFEASHEDVS----DDYALIAVQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCTU (Aminomethyltransferase OS=Mycobacterium tuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 51/159 (32.08%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA      +  ++A      A GG    ++H   ++LA+QGP
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNAANTAAVVGALQA-----AAPGGLSITNLHRSYAVLAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCBO (Aminomethyltransferase OS=Mycobacterium bovis GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 51/159 (32.08%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            SD   L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+   E+GG IDD +   V DD I+LV NA      +  ++A      A GG    ++H   ++LA+QGP
Sbjct:    2 SDVPELIHGPLEDRHRELGASFAEFGGWLMPVSYAGTVSEHNAT-RTAVGLFDVSHLGKALVRGPGAAQFVNSALTNDLGRIGPGKAQYTLCCTESGGVIDDLIAYYVSDDEIFLVPNAANTAAVVGALQA-----AAPGGLSITNLHRSYAVLAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACSK (Aminomethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L +T L++ +   G K V F GW +P+ +   I +     R    LFDVSHM  L ++G D +  L+ LV  D++ L            E+GG++DD ++ +  ++   LV+NA     D+  I AH+      G      I +E +LLA+QGP A
Sbjct:    5 LLRTPLYELYDQAGAKTVDFGGWELPVSFS-GIKKEHHAVRNAAGLFDVSHMGELLVEGPDALNNLQALVTNDLSKLQDNQAQYNAMCTESGGTVDDLIVYRRNENAYLLVLNAANIQSDIEWIRAHV-----SGQVTLTDISNETALLAVQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STRCO (Aminomethyltransferase OS=Streptomyces coelicolor GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 46/157 (29.30%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER---SLLALQGP 679
            L++TAL   H A G  M  FAGW MP++Y  S  E  +  R    LFD+SHM  +++ G      L   ++ ++  + PG    T+   E+GG +DD ++ ++++    +V NA       ++ +  + + T +       + D+R   +LLA+QGP
Sbjct:    6 LRRTALDATHRALGATMTDFAGWDMPLRY-GSEREEHVAVRTRAGLFDLSHMGEITVTGPQAAELLNFALVGNIGTVKPGRARYTMICREDGGILDDLIVYRLEEAEYMVVANA-------SNAQVVLDALTERAAGFDAEVRDDRDAYALLAVQGP 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_NITEU3.176e-1534.39Aminomethyltransferase OS=Nitrosomonas europaea GN... [more]
GCST_NITEC3.176e-1535.03Aminomethyltransferase OS=Nitrosomonas eutropha (s... [more]
GCST_RALSO5.417e-1537.80Aminomethyltransferase OS=Ralstonia solanacearum G... [more]
GCST_RALEH5.417e-1534.36Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]
GCST_HALHL5.417e-1533.33Aminomethyltransferase OS=Halorhodospira halophila... [more]
GCST_SACEN7.075e-1529.68Aminomethyltransferase OS=Saccharopolyspora erythr... [more]
GCST_MYCTU7.075e-1532.08Aminomethyltransferase OS=Mycobacterium tuberculos... [more]
GCST_MYCBO7.075e-1532.08Aminomethyltransferase OS=Mycobacterium bovis GN=g... [more]
GCST_BACSK7.075e-1532.05Aminomethyltransferase OS=Bacillus clausii (strain... [more]
GCST_STRCO9.240e-1529.30Aminomethyltransferase OS=Streptomyces coelicolor ... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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