FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROVI (Aminomethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT+L  +H   G K++ F GW MP+QY   IM      R    LFDVSHM    +KG+  + FL+ +   D++    G    T+   ENGG +DD +I ++     +L+VNAG  DKD A +E H  +F  +G  +S H  D+ SL+ALQGP A
Sbjct:    1 MKKTSLSSWHEKAGAKIIDFGGWLMPVQYS-GIMAEHKAVRSAAGLFDVSHMGNFYVKGRRALEFLQSVTTNDLSRTVDGQAQYTIMLYENGGIVDDLIIYRIDSVTFFLIVNAGNCDKDFAWLEEHAGAF--EGVQLSNH-SDQLSLIALQGPKA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACLD (Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            LK+T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + + G D +PFL+KL+  DV+ L  G    T    E+GG+IDD ++ K   +   LV+NA   DKD+  +  H+K      GDVS  ++ DE +LLALQGP A
Sbjct:    2 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEITGTDSLPFLQKLLTNDVSTLKEGGAQYTAMCYEDGGTIDDLLVYKKAANVYMLVINAANIDKDVDWMNKHIK------GDVSVRNVSDEIALLALQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            ENLK+T L++ H+  G KMVPF GW MP+QY   I+E  +  R +  +FDVSHM  + + GK    F+  L+  DV+ L  G    T     +GG++DD +  K   +   LVVNA  +DKDLAHI  +      +  DV+   + DE + +ALQGP A
Sbjct:    2 ENLKRTPLYEEHIKLGAKMVPFGGWEMPVQYT-GILEEHMAVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDLLAYKYSTERYLLVVNAANKDKDLAHILQY------RWDDVTVTDLSDETAEIALQGPRA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SERP5 (Aminomethyltransferase OS=Serratia proteamaculans (strain 568) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 65/156 (41.67%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L+G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H   +      V+  + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHA-VRQDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEEHAAPY-----GVALTVRDDLALVAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.218e-23
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T L++ HV  G KMV FAG++MPIQY  SI +  L  R+N  +FDVSHM  + ++GKD   F++ L+  D   L PG    T   NENGG +DD +  K+ ++   LV+NA   +KD + ++   +SF     + S    DE  L+A+QGP A
Sbjct:    1 MKYTPLYEEHVKLGAKMVDFAGFNMPIQYT-SIKDEVLAVRKNVGMFDVSHMGEVIVEGKDSTKFVDFLITNDFKNLKPGEIVYTAMCNENGGFVDDLLAYKISEEKAMLVINASNIEKDFSWMKKISESFDVTLENKS----DEYVLIAVQGPNA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACHD (Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LKKT L D +   GGK++ F GW++P+Q+  SI E     R    LFDVSHM  + + G   + +L++LV  DV+ +  G    T    ENGG++DD +I +  +D   LV+NA   DKD+A +E H     A  G    ++ ++ + LALQGP+A
Sbjct:    4 LKKTPLFDLYEQYGGKVIDFGGWALPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEVTGAQALNYLQRLVTNDVSKIKDGQAQYTAMCYENGGTVDDLLIYRRSEDQYLLVINAANIDKDIAWMEKH-----AIDGVSITNVSNQTAQLALQGPVA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATW (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATN (Aminomethyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_COLP3 (Aminomethyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 68/155 (43.87%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT LH  H+A+G KMV F GW MPI Y   I E     R +  +FDVSHM  + ++G D   FL +LVI DVA LA PG    T   NE GG IDD +I    D    LVVN+  R KDLA +      F     D++     E  +LA+QGP A
Sbjct:    4 KTVLHAKHLASGAKMVDFFGWDMPINYGSQIEEHHA-VRTDAGMFDVSHMTIVDVQGADAKAFLRRLVINDVAKLATPGKALYTGMLNEEGGVIDDLIIYFFSDTDYRLVVNSATRVKDLAWMTKQSTGF-----DITITERPEFGMLAVQGPEA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ALKMQ (Aminomethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            EN KKT L   +  + GK++ F GW+MP+Q++  I E     R N  LFDVSHM  + +KGKD + F++ L+  D + +       +    ENGG +DD ++ K ++D+ YLV+NAG  +KD    E  +K  TA   +V+ +I ++ S LALQGP A
Sbjct:    2 ENSKKTPLFTVYEKHKGKLIDFGGWAMPVQFEGIIPEHEA-VRSNAGLFDVSHMGEVEIKGKDALNFVQYLITNDASQMEKNQIIYSFMCYENGGVVDDLLVYKFEEDYFYLVINAGNIEKD---YEWMLKQSTAYDVEVN-NISNDVSELALQGPKA 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_PROVI8.338e-2439.74Aminomethyltransferase OS=Prosthecochloris vibriof... [more]
GCST_BACLD1.089e-2342.04Aminomethyltransferase OS=Bacillus licheniformis (... [more]
GCST_CARHZ1.422e-2340.25Aminomethyltransferase OS=Carboxydothermus hydroge... [more]
GCST_SERP55.404e-2341.67Aminomethyltransferase OS=Serratia proteamaculans ... [more]
GCST_THEM49.218e-2340.38Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_BACHD1.204e-2238.46Aminomethyltransferase OS=Bacillus halodurans GN=g... [more]
GCST_FRATW2.054e-2237.66Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATN2.054e-2237.66Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_COLP32.054e-2243.87Aminomethyltransferase OS=Colwellia psychrerythrae... [more]
GCST_ALKMQ2.054e-2239.24Aminomethyltransferase OS=Alkaliphilus metalliredi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
back to top