FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_LISIN (Aminomethyltransferase OS=Listeria innocua GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 51/157 (32.48%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            L KT +H  +   G K + F GW +P+Q+     E     R +  LFDVSHM  + ++G D   +L+ L+  D+  +  G     +   E GG++DD V+ K  +    LVVNA   +KD   +  ++       GDV+  +   E   LALQGP A
Sbjct:    4 LLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEA-VRTDAGLFDVSHMGEILVEGPDSTSYLQYLLSNDIEKIKIGKAQYNIMCYETGGTVDDLVVYKKSETEYILVVNAANTEKDYEWMVQNIV------GDVTVKNASSEFGQLALQGPNA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROMS (Aminomethyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 53/160 (33.12%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQG 676
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++     G G  TV  N+ GG IDD +I  +   K+D   + L+VNA   ++D   I+ ++        ++S  +   ++ LLALQG
Sbjct:    2 DLLKSPLYSKYVESNAKLVDFAGWEMPISFSGLIKEHE-SVRYSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFCEGQGLYTVMLNDKGGIIDDLIIYDLGIQKNDISELLLIVNASRYEEDFQWIKNNLNM-----SEISITNFKKDKVLLALQG 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCLE (Aminomethyltransferase OS=Mycobacterium leprae GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV NA      +  ++A         G    + H   ++LA+QGP
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNAANTAAVVDALQA-----VVPAGLTIINQHRSHAVLAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCLB (Aminomethyltransferase OS=Mycobacterium leprae (strain Br4923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +DA  L K  L D H   G     F GW MP+ Y  ++ E +   R    LFDVSH+    ++G     F+  ++  D+  + PG    T+  +E+GG IDD +   V DD I+LV NA      +  ++A         G    + H   ++LA+QGP
Sbjct:    2 TDAPELLKGPLEDRHRELGANFAEFGGWLMPVSYAGTVSEHSAT-RNAVGLFDVSHLGKALVRGPGAAQFVNSVLTNDLGRIRPGKAQYTLCCSESGGVIDDLIAYYVDDDEIFLVSNAANTAAVVDALQA-----VVPAGLTIINQHRSHAVLAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURCJ (Aminomethyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGG-DVSWHIHDERSLLALQGPLA 685
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    ++   +VVNAG  DKD+    A       +GG  ++     + +++A+QGP A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHAA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTADKDI----AWFNQLNEQGGYGLTIAPRRDFAIVAVQGPNA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEON (Probable aminomethyltransferase OS=Thermococcus onnurineus (strain NA1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD---ERSLLALQGPLA 685
            K+  + D+H  N  K+  FAGW MPI Y  SI +  L  R   ++FDVSHM     KGKD + FL+ +   D++     +GT T+  NE G   D++++  + +D   +V ++   +K  A   A +K    K G++   I +   + ++ ++QGP A
Sbjct:    3 KRVHIFDWHKKNAKKVEEFAGWEMPIWYS-SIKDEHLAVRNGVAIFDVSHMGEFIFKGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDETLVFNMGNDTYMMVCDSDAFEKLEAWFNA-IKRGIEKFGELDLEIENKTYDMAMFSIQGPKA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PYRKO (Probable aminomethyltransferase OS=Pyrococcus kodakaraensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD---ERSLLALQGPLA 685
            +K+  + D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM     +GKD + FL+ +   D++     +GT T+  NE G   D++++  + +D   +V ++   +K  A   A +K    K GD+   I +   + ++ ++QGP A
Sbjct:    2 VKRVHIFDWHKEHAKKVEEFAGWEMPIWYS-SIKEEHLAVRNGVGIFDVSHMGEFIFRGKDALEFLQYVTTNDISKPPAISGTYTLVLNERGAVKDETLVFNMGNDTYMMVCDSDAFEKLDAWFNA-IKRGIEKFGDIDLEIENKTYDMAMFSIQGPKA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BURA4 (Aminomethyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGG-DVSWHIHDERSLLALQGPLA 685
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    +D   +VVNAG  +KD+    A       +GG  ++     + +++A+QGP A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHEA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEDFFRVVVNAGTAEKDI----AWFNQLNEQGGYGLTIAPRRDFAIVAVQGPNA 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROM2 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV---KDD--HIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQG 676
            +L K+ L+  +V +  K+V FAGW MPI +   I E   + R +  LFD+SHM  +S+KG +   +++KL   ++   + G G  TV  N+ GG IDD +I  +   ++D   + L+VNA   ++D   I+ ++        ++S  +   ++ LLALQG
Sbjct:    2 DLLKSPLYSKYVESNAKLVNFAGWEMPISFSGLIKEHE-SVRSSAGLFDISHMGVISIKGINPKDYIQKLFPTNLYSFSEGQGLYTVMLNDKGGIIDDLIIYDLGIQENDLSELLLIVNASRYEEDFQWIKNNLNM-----SEISITNFKKDKVLLALQG 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_MYCA1 (Aminomethyltransferase OS=Mycobacterium avium (strain 104) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 2
Query:  203 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            S+  +L    L D H   G     F GW MP+ Y  ++ E     R    LFDVSH+    ++G     F+   +  D+  + PG    T+  NE+GG IDD +   V DD I+LV NA     + A +   ++     G  VS ++H   ++LA+QGP
Sbjct:    2 SNEADLLHGPLEDRHRDLGASFAEFGGWLMPVSYAGTVSEHNAT-RNAVGLFDVSHLGKALVRGTGAARFVNSALTNDLNRIGPGKAQYTLCCNESGGVIDDLIAYYVDDDEIFLVPNAA----NTAAVVEALQGAAPAGVTVS-NLHRSYAVLAVQGP 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_LISIN1.207e-1432.48Aminomethyltransferase OS=Listeria innocua GN=gcvT... [more]
GCST_PROMS1.576e-1433.13Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_MYCLE1.576e-1431.45Aminomethyltransferase OS=Mycobacterium leprae GN=... [more]
GCST_MYCLB1.576e-1431.45Aminomethyltransferase OS=Mycobacterium leprae (st... [more]
GCST_BURCJ2.058e-1432.91Aminomethyltransferase OS=Burkholderia cepacia (st... [more]
GCST_THEON2.688e-1431.65Probable aminomethyltransferase OS=Thermococcus on... [more]
GCST_PYRKO2.688e-1431.45Probable aminomethyltransferase OS=Pyrococcus koda... [more]
GCST_BURA42.688e-1432.91Aminomethyltransferase OS=Burkholderia ambifaria (... [more]
GCST_PROM23.511e-1432.50Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_MYCA13.511e-1432.08Aminomethyltransferase OS=Mycobacterium avium (str... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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