FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STRAW (Aminomethyltransferase OS=Streptomyces avermitilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 43/156 (27.56%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER---SLLALQGP 679
            + TAL   H + G  M  FAGW MP++Y  S  +  L  R    LFD+SHM  +++ G      L   ++ ++A +  G    T+    +GG +DD ++ ++++    +V NA       ++ +  + + T + G     + D+R   +L+A+QGP
Sbjct:    7 RHTALDALHRSLGATMTDFAGWDMPLRY-GSERDEHLAVRSKAGLFDLSHMGEITVTGPGAAALLNYALVGNIASVGVGRARYTMICRADGGILDDLIVYRLQEQTYLVVANA-------SNAQVVLDALTERAGGFDAVVRDDRDAYALIAVQGP 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PYRAB (Probable aminomethyltransferase OS=Pyrococcus abyssi GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA---HIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+  L D+H  +  K+  FAGW MPI Y  SI E  L  R    LFDVSHM  +  +GKD + FL+ +   D++     +G  T+  NE G   D+++I  + ++   ++ ++   +K  A   +++  ++ FT    ++    +D  ++ A+QGP A
Sbjct:    3 KRVHLFDWHKEHAKKIEEFAGWEMPIWYS-SIKEEHLAVRNAVGLFDVSHMGEIYFRGKDALKFLQYVTTNDISKPPAISGIYTLVLNERGAIKDETLIFNMGNNEYLMICDSDAFEKLYAWFTYLKKTIEQFTKLDLEIELKTYD-IAMFAVQGPKA 158          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKD-----DHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQG 676
            +L K+ L+  ++ +  K+V FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D + I+ ++ +      +       ++ L ALQG
Sbjct:    2 DLLKSPLYSKYIESNAKLVNFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLMLNEKGGIIDDLIIYDLGQQEEDISEIFLIVNASRYQTDFSWIKNNLNTNNISISNAK----KDKVLFALQG 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NOCFA (Aminomethyltransferase OS=Nocardia farcinica GN=gcvT PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 47/155 (30.32%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +L +  +HD H   G     F GW MP+ Y  ++ E     R    LFDVSH+   ++ G     F+   +  D+  + PG    T+  + +GG IDD +   V DD I+LV NA      +A + A      A  G      H + ++ A+QGP
Sbjct:    5 DLLRGPVHDLHGELGATFAEFGGWQMPVAYAGTVGEHQA-VRTTVGLFDVSHLGKATVAGPGAAQFVNATLTNDLGRIHPGKAQYTLCCSADGGVIDDLIAYYVADDEIFLVPNAANTAAVVAELAA-----AAPAGVTVTDQHRDYAVFAVQGP 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 47/158 (29.75%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKD-SIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +L+++ L+  HV  G KM  F GW MPI+Y    ++      R    +FDVSH+    + G     F+   +  D+  +APG    T+  N+ GG +DD +      + + LV NA    + +A + A      A  G      H    +LA+QGP A
Sbjct:    3 DLRRSPLYGRHVDLGAKMAGFGGWEMPIEYAGRGVLAEHQAVRGAVGIFDVSHLGKAEVTGAGAAEFVNACLSNDLGRIAPGQAQYTLCCNDEGGVVDDLIAYLFSGERVLLVPNAANNAEVVARLAA-----AAPAGVSVTDRHTGFGVLAVQGPAA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROM5 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=gcvT PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQG 676
            +L K+ L+  ++ +  K++ FAGW MPI +   I E   + R +   FD+SHM  +SL+G +   +++K    ++   + G G  T+  NE GG IDD +I  +         I+L+VNA     D   I+ ++ +      +       ++ LL++QG
Sbjct:    2 DLLKSPLYSKYIESNAKLINFAGWEMPISFSGLINEHE-SVRTSAGFFDISHMGVISLRGINPKEYIQKFFPTNLYSFSEGQGLYTLILNEKGGIIDDLIIYDLGRQEGDISEIFLIVNASRYQDDFLWIKNNLNTNQVSVSNAK----TDKVLLSIQG 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNY3 (Aminomethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 47/160 (29.38%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLA 685
            +T L++       K+  F GW MP+Q+   + +     R+   +FD+SHM    L G+  +  L+ LV +D+  L PG    TV  N  GG IDD ++          + + L+VNA    KD   +  H+        ++ +  +  E+ L+ALQGP A
Sbjct:    9 RTPLYNLITEQTTKLTTFGGWEMPVQFA-GLKQEHQAVREKVGMFDISHMGKFVLTGQKVLAALQSLVPSDLDRLTPGKAQYTVLLNAQGGIIDDIIVYDQGKNPEGQERVTLIVNAATTVKDKQWLLEHLPE------EIDFQDLSREKVLIALQGPEA 161          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HALSA (Probable aminomethyltransferase OS=Halobacterium salinarium GN=gcvT PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 46/161 (28.57%), Postives = 74/161 (45.96%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDD---HIYLVVNAG----CRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG      D+   H +AH    +        ++  +  ++A+QGP
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAHDLDASVD------NVTTDYGMVAVQGP 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HALS3 (Probable aminomethyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 46/161 (28.57%), Postives = 74/161 (45.96%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDD---HIYLVVNAG----CRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            L+ + LH  H   G     F GW+MP+ + D I       R+   +FDVSHM  + + G D    +++L   DV+ L PG       T+++G  IDD+V+ +   D       V NAG      D+   H +AH    +        ++  +  ++A+QGP
Sbjct:    3 LRTSPLHGRHEDRGASFTEFGGWNMPVDF-DGIQAEHAAVREAAGIFDVSHMGEIEVSGPDAERLMQRLTTNDVSRLDPGDAQYAAITDDDGIMIDDTVVYRTPADWPGAFLFVPNAGHDAAAFDRWTDHRDAHDLDASVD------NVTTDYGMVAVQGP 156          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CORA7 (Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 44/151 (29.14%), Postives = 71/151 (47.02%), Query Frame = 2
Query:  233 LHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LH  H   G    PF  W MP++Y D+ +E     R    LFD+SHM  + + G D   FL    I+++  L  G    ++   E+GG IDD +  ++++    +V NAG  D     +    + F     + S  +    +++A+QGP A
Sbjct:    9 LHAEHEKLGATFTPFGPWEMPLKY-DNELEEHRAVRNAAGLFDLSHMGEIWVNGPDAAEFLSYCFISNLTTLKEGKAKYSMICAEDGGIIDDLITYRLEETKFLVVPNAGNADTVWDALNERAEGFDVDLKNESRDV----AMIAVQGPKA 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_STRAW3.882e-1327.56Aminomethyltransferase OS=Streptomyces avermitilis... [more]
GCST_PYRAB5.070e-1330.38Probable aminomethyltransferase OS=Pyrococcus abys... [more]
GCST_PROMP5.070e-1329.56Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_NOCFA5.070e-1330.32Aminomethyltransferase OS=Nocardia farcinica GN=gc... [more]
GCST_FRAAA1.129e-1229.75Aminomethyltransferase OS=Frankia alni (strain ACN... [more]
GCST_PROM51.927e-1228.30Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_SYNY34.292e-1229.38Aminomethyltransferase OS=Synechocystis sp. (strai... [more]
GCST_HALSA9.562e-1228.57Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_HALS39.562e-1228.57Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_CORA72.782e-1129.14Aminomethyltransferase OS=Corynebacterium aurimuco... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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