FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERE8 (Aminomethyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 63/156 (40.38%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E  +  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  +++D+  LVVN+  R+KDL  I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHI-VRQDAGMFDVSHMTIVDLHGARTREFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFLREDYFRLVVNSATREKDLNWIIQHAEPY-----QVDVTVRDDLALVAVQGPTA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAHJ (Aminomethyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R    +FDVSHM  +S+KG D   F++ L+  D   L       T   NE GG IDD V  K+ D+   L+VNA   DKD A ++ H   F  +  +VS    ++   LA+QGP A
Sbjct:    5 LKKTPLYQNYVDSGAKIVEFGGWAMPVQFT-SIKEEHNAVRYEVGMFDVSHMGEISIKGNDASKFVQYLLSNDTNNLTDTKAQYTALCNEEGGIIDDLVTYKIGDNDYLLIVNAANTDKDFAWVQKHAPKFDVEVSNVS----NQFGQLAVQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATO (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATM (Aminomethyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  D+A L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDIAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATH (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATF (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ERWCT (Aminomethyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 65/156 (41.67%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+  H+A+G KMV F GW MP+ Y   + E  +  R++  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H  +F   G D+     DE +L+A+QGP A
Sbjct:    3 KQTPLYQQHLADGAKMVDFHGWMMPLHYGSQLDEHHI-VRRDAGIFDVSHMTIVDLHGVRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAAF---GVDI--RERDELALVAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLLALQGPLA 685
            LK+T L+D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + + GKD + FL+K++  DVA L PG    T     +GG++DD +I +  +    LV+NA   +KD+A +  H +      GDV+  +  D  SLLA+QGP A
Sbjct:    2 LKRTPLYDVYKEYGGKTIDFGGWELPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEVSGKDALSFLQKMMTNDVADLKPGNALYTAMCYPDGGTVDDLLIYQKSESCYLLVINASNIEKDIAWLTEHTE------GDVTLTNQSDGISLLAVQGPNA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 58/158 (36.71%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +NLKKT L + +    GK++ FAGW++P+Q++  I E     R    LFDVSHM  +++KG++   FL+ L+  D++ L       T   N NGG +DD ++ K  D+H YLVVNA   +KD   ++ +   +  +  ++S    DE + LA+QGP A
Sbjct:    2 DNLKKTPLFELYKKYNGKIIDFAGWALPVQFESIISEHEA-VRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKGNQVLYTFMCNYNGGVVDDLLVYKYSDEHFYLVVNAANIEKDYKWMKDNKGVYEVEIENIS----DEVAELAIQGPKA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +NLKKT L D +    GK++ FAGW++P+Q++  I E     R    LFDVSHM  +++KG++   FL+ L+  D++ L       T   N NGG +DD ++ K  D+H  LVVNA   +KD   ++ +   +  +  ++S    DE S LA+QGP A
Sbjct:    2 DNLKKTPLFDLYKKYNGKIIDFAGWALPVQFESIISEHEA-VRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKDNQVFYTFMCNYNGGVVDDLLVYKYSDEHFLLVVNAANIEKDYKWMKDNKGVYEVEINNIS----DEISELAVQGPKA 154          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_YERE82.682e-2240.38Aminomethyltransferase OS=Yersinia enterocolitica ... [more]
GCST_STAHJ2.682e-2239.74Aminomethyltransferase OS=Staphylococcus haemolyti... [more]
GCST_FRATO2.682e-2237.01Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATM2.682e-2237.01Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATH2.682e-2237.01Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATF2.682e-2237.01Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_ERWCT2.682e-2241.67Aminomethyltransferase OS=Erwinia carotovora subsp... [more]
GCST_BACA22.682e-2239.49Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_THEPX3.503e-2236.71Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_THEP33.503e-2237.34Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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