FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NATTJ (Aminomethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KT L+D H   GGK++ F GW +P+Q+   I++  +  R+   LFDVSHM  + ++G   + +L+K+V  DVA L PG    T    ENGG++DD +I K+ ++   L+VNA   DKD   ++ +      +G ++  ++ DE   +A+QGP A
Sbjct:    5 QKTPLYDIHKERGGKIIDFGGWYLPVQFT-GIIDEVMTTRKEAGLFDVSHMGEIIVEGPKALEYLQKMVPNDVARLKPGKILYTPMCYENGGTVDDFLIYKMDENKFLLIVNAANTDKDFEWLQEN----NTEGVELK-NLSDEYGQIAIQGPKA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRATT (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRAT1 (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F     DV+     + +++A+QGP A
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF-----DVAITPQTDLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T LHD  +A G K VPF+GW M +QYK   +E     R    +FD+SHM    L G++ +  ++KLV +++A LAPG    TV  N++GG IDD +     D   +L+VNA    KD   +  H+   TA+G  ++  +  E  LLA+QGP A
Sbjct:    3 LQRTPLHDLAIAAGAKFVPFSGWEMAVQYKGLKVEHQA-VRTEVGMFDISHMGKFQLAGENLIAAMQKLVPSNLARLAPGQAQYTVLLNDHGGIIDDVIYYHQGDRQGFLIVNAATTQKDWDWLTHHL---TAQGITLT-DVSQENILLAIQGPQA 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_PROA2 (Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 60/154 (38.96%), Postives = 89/154 (57.79%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +KKTAL+ +H A G K++ F G+ MP+QY   I E T   R +  LFDVSHM    +KG+    FL+ +   DV  L+ G    T+     GG +DD +I ++  D  ++VVNA   +KD + ++ H+ SF  +G  +  H  +E SL+ALQGP
Sbjct:    1 MKKTALYAWHEAAGAKIIDFGGYLMPVQYSGIIAEHTC-VRTSAGLFDVSHMGNFMVKGRGAKAFLQHMTSNDVDKLSDGQAQYTLLLYPEGGIVDDLIIYRIDADTWFMVVNASNMEKDYSWLQEHLGSF--EGVQLENHT-EELSLIALQGP 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLA 685
            LK+T L   +   G K V F GW MP+Q+  SI E     R    LFDVSHM  + ++G   +PFL+KL+  DVA L PG    T+  +E+ G++DD +I +  +D   LVVNA   +KD A +  H        GDV    +  E +LLALQGP A
Sbjct:    2 LKRTPLFPVYARYGAKTVEFGGWEMPVQFS-SIKEEHNAVRTRAGLFDVSHMGEIIVRGGGSLPFLQKLMTNDVAKLRPGRVQYTLMCDESAGTVDDLLIYQKGEDDYLLVVNAANTEKDFAWLSEH------ADGDVELEDVSAETALLALQGPAA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XYLFT (Aminomethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +  +       + ++LA+QGP A
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVRVEE-----RADLAMLAVQGPAA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XYLF2 (Aminomethyltransferase OS=Xylella fastidiosa (strain M23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +  +       + ++LA+QGP A
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVRVEE-----RADLAMLAVQGPAA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAAB (Aminomethyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS    ++   LA+QGP A
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAARYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGVIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS----NQYGQLAIQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BORPA (Aminomethyltransferase OS=Bordetella parapertussis GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 64/157 (40.76%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++   +   A G DV+     + +++A+QGP A
Sbjct:    5 LKRTPLAEEHLAAGARMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGRALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ---RVAAADGFDVAIAPRRDLAMVAVQGPNA 157          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_NATTJ3.503e-2236.13Aminomethyltransferase OS=Natranaerobius thermophi... [more]
GCST_FRATT3.503e-2237.66Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAT13.503e-2237.66Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_SYNP24.575e-2239.10Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_PROA24.575e-2238.96Aminomethyltransferase OS=Prosthecochloris aestuar... [more]
GCST_GEOTN4.575e-2240.76Aminomethyltransferase OS=Geobacillus thermodenitr... [more]
GCST_XYLFT7.804e-2238.22Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLF27.804e-2238.22Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_STAAB7.804e-2239.62Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_BORPA7.804e-2240.76Aminomethyltransferase OS=Bordetella parapertussis... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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