FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_BORBR (Aminomethyltransferase OS=Bordetella bronchiseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 64/157 (40.76%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            LK+T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++   +   A G DV+     + +++A+QGP A
Sbjct:    5 LKRTPLAEEHLAAGARMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ---RVAAADGFDVAIAPRRDLAMVAVQGPNA 157          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XYLFM (Aminomethyltransferase OS=Xylella fastidiosa (strain M12) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +  +       + ++LA+QGP A
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVRVEE-----RADLAMLAVQGPAA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_XYLFA (Aminomethyltransferase OS=Xylella fastidiosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +  +       + ++LA+QGP A
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVRVEE-----RADLAMLAVQGPAA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 60/156 (38.46%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L++ H+  G +MV FAG+ +P+QY  SI+E  L  R+   +FDVSHM    ++GK+ + FL+     D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH++A  K F  +  D S    +  +LLALQGP A
Sbjct:    1 MKKTPLYEAHLRLGARMVDFAGYLLPLQYT-SIVEEHLAVRRAVGVFDVSHMGEFLVRGKEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS----ERTALLALQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAES (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 61/155 (39.35%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    DVS +  D+   LA+QGP
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTV---DVS-NTSDKYGQLAIQGP 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAEQ (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 61/155 (39.35%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  215 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    DVS +  D+   LA+QGP
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTV---DVS-NTSDKYGQLAIQGP 153          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAAW (Aminomethyltransferase OS=Staphylococcus aureus (strain MW2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS    ++   LA+QGP A
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS----NQYGQLAIQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAAT (Aminomethyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS    ++   LA+QGP A
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS----NQYGQLAIQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAAS (Aminomethyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS    ++   LA+QGP A
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS----NQYGQLAIQGPKA 155          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_STAAR (Aminomethyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  209 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS    ++   LA+QGP A
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS----NQYGQLAIQGPKA 155          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_BORBR7.804e-2240.76Aminomethyltransferase OS=Bordetella bronchiseptic... [more]
GCST_XYLFM1.019e-2138.22Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLFA1.019e-2138.22Aminomethyltransferase OS=Xylella fastidiosa GN=gc... [more]
GCST_THET81.019e-2138.46Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_STAES1.019e-2139.35Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_STAEQ1.019e-2139.35Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_STAAW1.019e-2139.62Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAT1.019e-2139.62Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAS1.019e-2139.62Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAR1.019e-2139.62Aminomethyltransferase OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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