FC868688

Overview
NameFC868688
Unique NameFC868688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27
Identity = 83/214 (38.79%), Postives = 103/214 (48.13%), Query Frame = 3
Query:   27 NWCLTSVS-QAQSSLIKSSTLRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYXXXXXXXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIK 665
            NWC  +V+ +A+SS I +S   P   A  +S +  P LIR  PV AAP                                    VA A ++                +VER+K GF  FK E Y+K P  +  L  GQ+PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK
Sbjct:   73 NWCYATVAPRARSSTIAASLGTP---APSSSASFRPKLIRTTPVQAAP------------------------------------VAPALMDA---------------AVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIK 232          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  348 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGI----KDSCLSHLMEQLH 701
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +       C+ H+    H
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPAVSH 121          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 3
Query:  348 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGI----KDSCLSHLMEQLH 701
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +       C+ H+    H
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPAVSH 121          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  357 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKDSCLSHLMEQL 698
            I +GF+ F+R+ Y     L+  LA  Q+PK +  ACSDSRV P  +   +PGE FV+RN  NIVP Y                + L V +IVV GHS CG +        ++QL
Sbjct:    4 IIDGFLRFQRDAYPARSQLFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQPGGVSASVEYAVAV-LGVGDIVVCGHSDCGAMGAIASCACLDQL 116          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CAN_EMENI (Carbonic anhydrase OS=Emericella nidulans GN=AN1805 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  321 PSDTKAF-----DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIK 665
            PSD KA       + ++I E    +   K   +P  +++LA GQSP+Y+   CSDSRV  + ++    GE FV RN+AN+VP  D +              HLKV +IVV GH  CGG++
Sbjct:    4 PSDRKAVTRYLEQTHDKIFESNRAWVASKKGADPEFFNKLAAGQSPEYLYIGCSDSRVPANEIMGLDAGEVFVHRNIANVVPTIDLSSMSVINYAVG----HLKVKHIVVCGHYNCGGVQ 119          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 3
Query:  348 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIK 665
            + ++ EG  HF+   Y  +  L+ + AKGQ P+ +   CSDSR+ P+ +     GE FV+RN  N++PP+                  L + ++VV GHS CG +K
Sbjct:    1 MRKLIEGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAANGGEGASIEYAIAA-LNIEHVVVCGHSHCGAMK 105          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  348 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKDSC-LSHLMEQL 698
            ++R+ EG   F+   +  +  L+ +L+ GQ P+ +   CSDSRV P+ +   + G+ FV+RN  NI+PPY                + L+++ I+V GHS CG +K    L+ L E+L
Sbjct:    1 MQRLIEGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLLKLNSLQEKL 117          
BLAST of FC868688 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 36/107 (33.64%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  366 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHSACGGIKDSCLSH 683
            G + F+  +YE+   LY  L   Q P  +  +C DSRV P+ +   QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS CG      L H
Sbjct:    6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGACGSIHLIH 112          
The following BLAST results are available for this feature:
BLAST of FC868688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAHC_HORVU1.399e-2738.79Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_ECOLI5.515e-1636.89Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO575.515e-1636.89Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_PSEAE5.162e-1438.60Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]
CAN_EMENI5.162e-1437.50Carbonic anhydrase OS=Emericella nidulans GN=AN180... [more]
CYNT_SYNE75.707e-1333.02Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CYNT_SYNY37.454e-1333.05Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_HELPJ1.661e-1233.64Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003E07EF AbioticL1 Citrus clementina cDNA clone C31003E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868688 ID=FC868688; Name=FC868688; organism=Citrus clementina; type=EST; length=734bp
GGGACAATGTCGACAGCTTCGATCCTAACTGGTGCCTTACTTCTGTTTCT
CAAGCTCAATCCTCTCTCATCAAAAGCTCCACATTACGTCCCTCCATCGT
TGCAAGGCTCAACTCTCCTGCTTCTCCTCCTAGCCTCATCCGAAACGAGC
CCGTTTTTGCTGCACCAGCTCCTATCATCAACCCTAACTGGAGGGAAGAC
ATGGCAAATCAGTCGTACGAGGAAGCCATTGAAGCTCTCAAGAAACTTCT
CAAGGAGAAGGAAGACTTGAAACCTGTTGCTGCTGCAAAAGTAGAGCAGA
TTACTGCGCAGCTACAGACTCCATCTGACACCAAAGCATTTGATTCCGTG
GAGAGGATCAAAGAGGGCTTCATTCACTTCAAGAGAGAAAAATACGAGAA
AAATCCAGCTCTGTACTCTGAGCTAGCCAAAGGCCAAAGCCCGAAGTATA
TGGTATTTGCCTGCTCAGACTCCAGGGTTTGCCCGTCCCATGTGTTGGAT
TTTCAACCTGGGGAAGCTTTCGTGGTTCGCAATGTTGCTAACATTGTTCC
ACCCTATGATCAGACTAAATATGCTGGAGTTGGAGCTGCTGTCGAGTATG
CAGTTTTGCATCTCAAGGTTTCAAACATTGTGGTCATTGGGCACAGCGCC
TGTGGTGGCATCAAGGACTCATGTCTTTCACATTTGATGGAACAACTCCA
CCGATTCATTGAGACTGGGTGAAATTGGCATCCC
back to top