FC868694

Overview
NameFC868694
Unique NameFC868694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 2
Query:   74 LLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            L  F  + I   V+  D    +LI+S +    +EL  +   + +KL +G++V+  + ++T FG FV++ GV  L+H +E+S D   +PA     G  V+ K+  LD    RI LS+K     P  +A + +  G   L+G ++  +      D  + +  L  ++G+  VS+
Sbjct:  183 LNQFKNKDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAG-SVLEGTVKRVK------DFGAFVEILPGIEGLVHVSQ 347          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 50/174 (28.74%), Postives = 92/174 (52.87%), Query Frame = 2
Query:   74 LLSFLGQKINVNVVMADRKFR--KLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            L  ++G+  +V ++    K R  K++ S R    +E  + + ++  KL  G +V+  +K++T FG FVE+EGV  L+H +E+SW     PA   KIG  ++  V  +D   +++ LS+K++T +P  +  E    G   L G++        +AD  + ++    VDG+  +S+
Sbjct:  434 LKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVL-GKV------IRFADFGAFVKLEPGVDGLVHISE 600          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLE 502
            + G+ +++ VV  DR   ++I+S R     E   KK+ L+  L +G ++   ++++T FG FV++ G+  L+H +++S      P+   + GQ V+ KV  +D   ERI LS+K+  P P     E V  G D L+G ++
Sbjct:  143 YKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPG-DVLEGTVQ 281          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAEQ (30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            F GQ I + V   D +  ++I+S +  E+ E   KK S++  L  GD++   + ++T FG F+++ GV  L+H +E+S +    P     +G+ V+ KV  ++   ERI LS+K+  P P
Sbjct:  149 FDGQTIRIKVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTP 268          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLPN (30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 38/133 (28.57%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451
            D +K+K L  ++G+     ++  + + R ++VS R     E + KK  L+ ++ IG+  K  +K IT FGVF++++G+  L+H T+++W     P+   ++ Q +E  +  +D    R+ L LK+   +P  D
Sbjct:  165 DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 2
Query:   86 LGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            LG+++   V+  D+K   ++VS R     E  +++  ++  L  G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  V  KV + D    R+ L LK++  DP      + +    P++ +L      T   D    +  L  V+G+  VS+
Sbjct:  148 LGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPW-----AAIAENHPVNSKLTGKV--TNLTDYGCFVEILDGVEGLVHVSE 308          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_RHOPA (30S ribosomal protein S1 OS=Rhodopseudomonas palustris GN=rpsA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 33/111 (29.73%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  110 VVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            ++  DR+   ++VS R    E   E+++ L+  L  G ++   +K IT +G FV++ G+  L+H T+++W     P     IGQ V+ K+ +++    RI L +K++  DP
Sbjct:  165 ILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLTR (30S ribosomal protein S1 OS=Chlamydia trachomatis GN=rpsA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 38/133 (28.57%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451
            D +K+K L  ++G+     ++  +   R ++VS R     E + KK  L+ ++ IG+  K  +K IT FGVF++++G+  L+H T+++W     P+   ++ Q +E  +  +D    R+ L LK+   +P  D
Sbjct:  165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLMU (30S ribosomal protein S1 OS=Chlamydia muridarum GN=rpsA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 38/133 (28.57%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451
            D +K+K L  ++G+     ++  +   R ++VS R     E + KK  L+ ++ IG+  K  +K IT FGVF++++G+  L+H T+++W     P+   ++ Q +E  +  +D    R+ L LK+   +P  D
Sbjct:  165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 35/118 (29.66%), Postives = 64/118 (54.24%), Query Frame = 2
Query:   89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            G+++   V+  D+K   ++VS R     E   ++ +L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  ++ KV + D    R+ L LK++  DP
Sbjct:  149 GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266          
The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS1_LEULA1.456e-1327.9140S ribosomal protein S1 OS=Leuconostoc lactis GN=... [more]
ISPH_CLOAB1.456e-1328.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
RS1H_BACSU1.901e-1331.4330S ribosomal protein S1 homolog OS=Bacillus subti... [more]
RS1_STAEQ7.225e-1332.5030S ribosomal protein S1 OS=Staphylococcus epiderm... [more]
RS1_CHLPN1.232e-1228.5730S ribosomal protein S1 OS=Chlamydia pneumoniae G... [more]
RS1_HAEIN1.609e-1226.7930S ribosomal protein S1 OS=Haemophilus influenzae... [more]
RS1_RHOPA3.586e-1229.7330S ribosomal protein S1 OS=Rhodopseudomonas palus... [more]
RS1_CHLTR4.683e-1228.5730S ribosomal protein S1 OS=Chlamydia trachomatis ... [more]
RS1_CHLMU4.683e-1228.5730S ribosomal protein S1 OS=Chlamydia muridarum GN... [more]
RS1_PSEAE7.988e-1229.6630S ribosomal protein S1 OS=Pseudomonas aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionC31003F03EF AbioticL1 Citrus clementina cDNA clone C31003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bp
AGAGAGAGAAATTTCCCCAGAATTCAAATTGGATGATCTTCTTAGAATAT
ACGATCAAGAGAAACTGAAATTCTTGTTATCATTCCTTGGCCAGAAAATC
AATGTGAATGTTGTAATGGCTGACCGGAAATTCAGAAAACTTATTGTTTC
TGTGAGACCAAAAGAAAGGGAAGAATTGGTCGAGAAAAAGAGAAGTCTCA
TGGCCAAACTTCGCATTGGAGATATAGTGAAGTGCTGCATTAAGAAGATA
ACTTATTTTGGTGTTTTTGTTGAGGTTGAAGGTGTGCCTGCTTTAATTCA
CCAGACCGAAGTGTCATGGGATGCCACTTTGGACCCGGCATCATACTTCA
AAATTGGGCAGGTTGTGGAGGCAAAAGTTCATCAACTAGATTTTGCACTT
GAGCGCATTTTTCTGTCATTGAAGGAGATTACGCCGGATCCACTGACTGA
TGCCTTGGAGTCTGTGGTTGGTGGTCGTGATCCCTTGGATGGGAGATTGG
AAGCTGCTCAAGCCGATACTGAGTGGGCTGATGTGGAATCTCTTATAAGA
GAACTGCAAAAGGTGGATGGGATTGAGTCTGTATCAAAAGGCCGTTTCTT
TGTAAGCCCTGGTTTAGCTCCGACATTTCAGGTTTATATGTCAACAATGT
TCGAGAATCAGTACAAGTTACTTGCTCGATCAGGGAAAACAAGTGCAGAA
GTAATAGTGCAAGCATCCTTG
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