FC868694
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_LEULA (40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13 Identity = 48/172 (27.91%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 74 LLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 L F + I V+ D +LI+S + +EL + + +KL +G++V+ + ++T FG FV++ GV L+H +E+S D +PA G V+ K+ LD RI LS+K P +A + + G L+G ++ + D + + L ++G+ VS+ Sbjct: 183 LNQFKNKDIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAG-SVLEGTVKRVK------DFGAFVEILPGIEGLVHVSQ 347
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13 Identity = 50/174 (28.74%), Postives = 92/174 (52.87%), Query Frame = 2 Query: 74 LLSFLGQKINVNVVMADRKFR--KLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 L ++G+ +V ++ K R K++ S R +E + + ++ KL G +V+ +K++T FG FVE+EGV L+H +E+SW PA KIG ++ V +D +++ LS+K++T +P + E G L G++ +AD + ++ VDG+ +S+ Sbjct: 434 LKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVL-GKV------IRFADFGAFVKLEPGVDGLVHISE 600
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1H_BACSU (30S ribosomal protein S1 homolog OS=Bacillus subtilis GN=ypfD PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.901e-13 Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLE 502 + G+ +++ VV DR ++I+S R E KK+ L+ L +G ++ ++++T FG FV++ G+ L+H +++S P+ + GQ V+ KV +D ERI LS+K+ P P E V G D L+G ++ Sbjct: 143 YKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPG-DVLEGTVQ 281
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_STAEQ (30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 2 Query: 83 FLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 F GQ I + V D + ++I+S + E+ E KK S++ L GD++ + ++T FG F+++ GV L+H +E+S + P +G+ V+ KV ++ ERI LS+K+ P P Sbjct: 149 FDGQTIRIKVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTP 268
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLPN (30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12 Identity = 38/133 (28.57%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451 D +K+K L ++G+ ++ + + R ++VS R E + KK L+ ++ IG+ K +K IT FGVF++++G+ L+H T+++W P+ ++ Q +E + +D R+ L LK+ +P D Sbjct: 165 DNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_HAEIN (30S ribosomal protein S1 OS=Haemophilus influenzae GN=rpsA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12 Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 2 Query: 86 LGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 LG+++ V+ D+K ++VS R E +++ ++ L G VK +K +T +G FV++ GV L+H T+++W P+ +G V KV + D R+ L LK++ DP + + P++ +L T D + L V+G+ VS+ Sbjct: 148 LGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPW-----AAIAENHPVNSKLTGKV--TNLTDYGCFVEILDGVEGLVHVSE 308
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_RHOPA (30S ribosomal protein S1 OS=Rhodopseudomonas palustris GN=rpsA PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12 Identity = 33/111 (29.73%), Postives = 61/111 (54.95%), Query Frame = 2 Query: 110 VVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 ++ DR+ ++VS R E E+++ L+ L G ++ +K IT +G FV++ G+ L+H T+++W P IGQ V+ K+ +++ RI L +K++ DP Sbjct: 165 ILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLTR (30S ribosomal protein S1 OS=Chlamydia trachomatis GN=rpsA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12 Identity = 38/133 (28.57%), Postives = 72/133 (54.14%), Query Frame = 2 Query: 53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451 D +K+K L ++G+ ++ + R ++VS R E + KK L+ ++ IG+ K +K IT FGVF++++G+ L+H T+++W P+ ++ Q +E + +D R+ L LK+ +P D Sbjct: 165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_CHLMU (30S ribosomal protein S1 OS=Chlamydia muridarum GN=rpsA PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12 Identity = 38/133 (28.57%), Postives = 72/133 (54.14%), Query Frame = 2 Query: 53 DQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTD 451 D +K+K L ++G+ ++ + R ++VS R E + KK L+ ++ IG+ K +K IT FGVF++++G+ L+H T+++W P+ ++ Q +E + +D R+ L LK+ +P D Sbjct: 165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWED 297
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_PSEAE (30S ribosomal protein S1 OS=Pseudomonas aeruginosa GN=rpsA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 35/118 (29.66%), Postives = 64/118 (54.24%), Query Frame = 2 Query: 89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 G+++ V+ D+K ++VS R E ++ +L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G ++ KV + D R+ L LK++ DP Sbjct: 149 GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSLGLKQLGEDP 266 The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bpback to top |