FC868694

Overview
NameFC868694
Unique NameFC868694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALE 460
            G+++   V+  D+K   ++VS R     E   ++  L+  L+ G IV   +K +T +G FV++ GV  L+H T+++W     P+    IG  V+ K+ + D    R+ L LK+++ DP T   E
Sbjct:  149 GKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISE 272          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP-----LTDALESVVGGR 478
            + +  +++ L  ++G++I   ++  D+    +++S R    +   E +   +  L+ G I K  +  I  FG FV++ GV  L+H +E+SW     P+   ++G  V  +V  +D   ER+ LSLK    DP      T A+  +V G+
Sbjct:  152 LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGK 300          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_MYCLE (30S ribosomal protein S1 OS=Mycobacterium leprae GN=rpsA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 40/149 (26.85%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP-----LTDALESVVGGR 478
            + +  +++ L  ++G++I   ++  D+    +++S R    +   E +   + +L+ G I K  +  I  FG FV++ GV  L+H +E+SW     P+   ++G  V  +V  +D   ER+ LSLK    DP      T A+  +V G+
Sbjct:  152 LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGK 300          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            + D   ++  L   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  KV + D    R+ L LK++  DP     +    G   L GR+      T   D    +   + V+G+  VS+
Sbjct:  135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECOLI (30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            + D   ++  L   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  KV + D    R+ L LK++  DP     +    G   L GR+      T   D    +   + V+G+  VS+
Sbjct:  135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECOL6 (30S ribosomal protein S1 OS=Escherichia coli O6 GN=rpsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            + D   ++  L   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  KV + D    R+ L LK++  DP     +    G   L GR+      T   D    +   + V+G+  VS+
Sbjct:  135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECO57 (30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            + D   ++  L   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  KV + D    R+ L LK++  DP     +    G   L GR+      T   D    +   + V+G+  VS+
Sbjct:  135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 33/117 (28.21%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   92 QKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            ++I+  ++  D++   ++VS R     E   ++++ + +L+ G  +K  IK IT +G FV++ GV  L+H T+++W     P+    +G  V  KV + D   +R+ L +K++  DP
Sbjct:  146 KEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = 2
Query:   89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  KV + D    R+ L LK++  DP     +    G   L GR+      T   D    +   + V+G+  VS+
Sbjct:   44 GKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 203          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_BUCAI (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 45/181 (24.86%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589
            + D   ++  +   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  VK  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  K+ + D    R+ L LK++  DP   A+         L GR+      T   D    +   + V+G+  VS+
Sbjct:  135 LVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWI-AISKRYPEETKLSGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308          
The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS1_BUCBP7.988e-1230.6530S ribosomal protein S1 OS=Buchnera aphidicola su... [more]
RS1_MYCTU1.363e-1126.8530S ribosomal protein S1 OS=Mycobacterium tubercul... [more]
RS1_MYCLE1.363e-1126.8530S ribosomal protein S1 OS=Mycobacterium leprae G... [more]
RS1_SHIFL2.324e-1125.9730S ribosomal protein S1 OS=Shigella flexneri GN=r... [more]
RS1_ECOLI2.324e-1125.9730S ribosomal protein S1 OS=Escherichia coli (stra... [more]
RS1_ECOL62.324e-1125.9730S ribosomal protein S1 OS=Escherichia coli O6 GN... [more]
RS1_ECO572.324e-1125.9730S ribosomal protein S1 OS=Escherichia coli O157:... [more]
RS1_COXBU3.035e-1128.2130S ribosomal protein S1 OS=Coxiella burnetii GN=r... [more]
RS1_PROSP3.964e-1126.9530S ribosomal protein S1 (Fragment) OS=Providencia... [more]
RS1_BUCAI3.964e-1124.8630S ribosomal protein S1 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionC31003F03EF AbioticL1 Citrus clementina cDNA clone C31003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bp
AGAGAGAGAAATTTCCCCAGAATTCAAATTGGATGATCTTCTTAGAATAT
ACGATCAAGAGAAACTGAAATTCTTGTTATCATTCCTTGGCCAGAAAATC
AATGTGAATGTTGTAATGGCTGACCGGAAATTCAGAAAACTTATTGTTTC
TGTGAGACCAAAAGAAAGGGAAGAATTGGTCGAGAAAAAGAGAAGTCTCA
TGGCCAAACTTCGCATTGGAGATATAGTGAAGTGCTGCATTAAGAAGATA
ACTTATTTTGGTGTTTTTGTTGAGGTTGAAGGTGTGCCTGCTTTAATTCA
CCAGACCGAAGTGTCATGGGATGCCACTTTGGACCCGGCATCATACTTCA
AAATTGGGCAGGTTGTGGAGGCAAAAGTTCATCAACTAGATTTTGCACTT
GAGCGCATTTTTCTGTCATTGAAGGAGATTACGCCGGATCCACTGACTGA
TGCCTTGGAGTCTGTGGTTGGTGGTCGTGATCCCTTGGATGGGAGATTGG
AAGCTGCTCAAGCCGATACTGAGTGGGCTGATGTGGAATCTCTTATAAGA
GAACTGCAAAAGGTGGATGGGATTGAGTCTGTATCAAAAGGCCGTTTCTT
TGTAAGCCCTGGTTTAGCTCCGACATTTCAGGTTTATATGTCAACAATGT
TCGAGAATCAGTACAAGTTACTTGCTCGATCAGGGAAAACAAGTGCAGAA
GTAATAGTGCAAGCATCCTTG
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