FC868694
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_BUCBP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsA PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12 Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 2 Query: 89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALE 460 G+++ V+ D+K ++VS R E ++ L+ L+ G IV +K +T +G FV++ GV L+H T+++W P+ IG V+ K+ + D R+ L LK+++ DP T E Sbjct: 149 GKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISE 272
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_MYCTU (30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP-----LTDALESVVGGR 478 + + +++ L ++G++I ++ D+ +++S R + E + + L+ G I K + I FG FV++ GV L+H +E+SW P+ ++G V +V +D ER+ LSLK DP T A+ +V G+ Sbjct: 152 LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGK 300
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_MYCLE (30S ribosomal protein S1 OS=Mycobacterium leprae GN=rpsA PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 40/149 (26.85%), Postives = 75/149 (50.34%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP-----LTDALESVVGGR 478 + + +++ L ++G++I ++ D+ +++S R + E + + +L+ G I K + I FG FV++ GV L+H +E+SW P+ ++G V +V +D ER+ LSLK DP T A+ +V G+ Sbjct: 152 LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGK 300
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_SHIFL (30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 + D ++ L G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + KV + D R+ L LK++ DP + G L GR+ T D + + V+G+ VS+ Sbjct: 135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECOLI (30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 + D ++ L G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + KV + D R+ L LK++ DP + G L GR+ T D + + V+G+ VS+ Sbjct: 135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECOL6 (30S ribosomal protein S1 OS=Escherichia coli O6 GN=rpsA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 + D ++ L G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + KV + D R+ L LK++ DP + G L GR+ T D + + V+G+ VS+ Sbjct: 135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_ECO57 (30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11 Identity = 47/181 (25.97%), Postives = 84/181 (46.41%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 + D ++ L G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + KV + D R+ L LK++ DP + G L GR+ T D + + V+G+ VS+ Sbjct: 135 LVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_COXBU (30S ribosomal protein S1 OS=Coxiella burnetii GN=rpsA PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11 Identity = 33/117 (28.21%), Postives = 65/117 (55.56%), Query Frame = 2 Query: 92 QKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442 ++I+ ++ D++ ++VS R E ++++ + +L+ G +K IK IT +G FV++ GV L+H T+++W P+ +G V KV + D +R+ L +K++ DP Sbjct: 146 KEIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDP 262
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_PROSP (30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11 Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = 2 Query: 89 GQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + KV + D R+ L LK++ DP + G L GR+ T D + + V+G+ VS+ Sbjct: 44 GKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEG-TKLTGRV------TNLTDYGCFVEIEEGVEGLVHVSE 203
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_BUCAI (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11 Identity = 45/181 (24.86%), Postives = 84/181 (46.41%), Query Frame = 2 Query: 47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDPLTDALESVVGGRDPLDGRLEAAQADTEWADVESLIRELQKVDGIESVSK 589 + D ++ + G+++ V+ D+K ++VS R E ++ L+ L+ G VK +K +T +G FV++ GV L+H T+++W P+ +G + K+ + D R+ L LK++ DP A+ L GR+ T D + + V+G+ VS+ Sbjct: 135 LVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLKQLGEDPWI-AISKRYPEETKLSGRV------TNLTDYGCFVEIEEGVEGLVHVSE 308 The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bpback to top |