FC868696

Overview
NameFC868696
Unique NameFC868696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37
Identity = 83/216 (38.43%), Postives = 129/216 (59.72%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D  +   D           +D++L  I      + P  V     +     + AA +E       ++E++LE  ++RL   RS
Sbjct:   12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKVTDALPEPEITGAMAASDE-------EEEEDLEAMQSRLAALRS 220          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAI--AGETAAQLP-EAVRKERVKQSAQ 618
            KP P++L++ W+R+LR+E R ++ Q+R I  +EK   + IK+  K  D  SAK+LA+E+V SRK   R+Y  KAQMNS+SM L  ++A+ +  G+L KS E+MK++N+L+K PE+   M     EMTKAG++EE ++D  D  +            V+K++  I  +G   +  P E  ++E V Q  Q
Sbjct:    7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEILVSGPQVSSAPLETHQQEEVVQEKQ 193          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 66/220 (30.00%), Postives = 112/220 (50.91%), Query Frame = 1
Query:   43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARL 702
            MN+   KPNP+++LR+ +R++ Q  R IE++I  +Q EEK +   IK  AK  +  + K LA++L+R R+ +  L  ++AQM  I+ H     A       +  + + M  ++  M   + A  M+EF K+  +  +  E ++D++D ALD+           ++VL  I  + A+QL  A + +   + A        ED  + GID   ELE+  A L
Sbjct:    1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKA--------EDVGSSGID---ELEKRLAAL 209          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   64 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 462
            P PQ+  R WQ  +R+E R ++RQ+  ++   K  +  +K  AK++D+++ + LA+E+ R+ +   RL E+KA + S+S+ L + +A+ +  G +  S ++M+ V++L++ P+++ TM+  S E+TKAGV+EE
Sbjct:   11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 59/208 (28.37%), Postives = 110/208 (52.88%), Query Frame = 1
Query:   64 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687
            P+P++  R  +  LR+  RNIE+ +R++   +   Q+ IK +AK+ND+ + +  A+EL +  K  +R+Y ++AQ++S+ M + E++ +      +  SA +M+ VN+L++ P++  TM E  KE+ K+G+I E V+D +++  D           V + +     E   ++ E    E+ K   Q        +   + I DEK  EE
Sbjct:   11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD-----------VGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPTVELAANEEEQEIPDEKVDEE 207          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 57/199 (28.64%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAE 657
            K     ++++  R+LR   R I R    ++++E+ ++  IK  AK  +  + K LA++LV+ RK  NR Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++ +A    R   SA TS+A+   D   E
Sbjct:    7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIE 205          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 50/181 (27.62%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 585
            M +   +  P+++LR+ QR L +  R I+R+   +Q +EK +   IK  AK+  ++SAK +A++LVR+R  + + YE K Q+ ++S+ +    +       +    + M  +N  M  P+    M EF ++  K  + EE +ND +D  ++           +++VL  I  + A+QL +A
Sbjct:    1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 61/222 (27.48%), Postives = 108/222 (48.65%), Query Frame = 1
Query:   43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSA--QTSRAAQEEDAVAEGIDDEKELEENRARL 702
            MN+ K K  P+  LR  +R++    R IER+I  +Q EEK +   IK  AK  + ++ K LA++LVR R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   + A  +++F K+  +  +  E +++A+D  LD            ++VL  I    A+QL  A +     ++A    S AA  +++ +  +D   ELE+  A L
Sbjct:    1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVD---ELEKRLASL 219          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 63/225 (28.00%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   40 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAE---GIDDEKELEENRAR 699
            +MN I  K   P +LLR+ +R L +  R IER+ + +Q +EK +   IK  AK+  + + K +A++L+R+R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF ++  K  ++ E + DA+D AL+           V +VL  I  +   +L  A     V   A  ++  Q E   AE   GID + +   +  R
Sbjct:    1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA-PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 55/205 (26.83%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEK 675
            K     +++D  ++L+ + R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++ +A    +   SA  S++         GI DE+
Sbjct:    7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKST--------GISDEE 203          
The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHMP3_XENTR1.457e-3738.43Charged multivesicular body protein 3 OS=Xenopus t... [more]
CHMP3_DICDI4.106e-3239.15Charged multivesicular body protein 3 OS=Dictyoste... [more]
VPS2C_ARATH9.489e-2130.00Vacuolar protein sorting-associated protein 2 homo... [more]
VPS24_SCHPO9.489e-2134.59Vacuolar protein sorting-associated protein 24 OS=... [more]
VPS24_YEAST1.239e-2028.37Vacuolar protein-sorting-associated protein 24 OS=... [more]
CHM2B_CHICK9.819e-1828.64Charged multivesicular body protein 2b OS=Gallus g... [more]
CM2A2_DICDI1.282e-1727.62Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2B_ARATH1.675e-1727.48Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2A_ARATH1.675e-1728.00Vacuolar protein sorting-associated protein 2 homo... [more]
CH2BA_XENLA4.125e-1626.83Charged multivesicular body protein 2b-A OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionC31003F05EF AbioticL1 Citrus clementina cDNA clone C31003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bp
GGAGAAAAATTAGAAAAAAAAGCTCAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACCTGAGCTCTGCCAAGTCTCTGGCTCAGGAACTTGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AGGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACAGCAGCACAACTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTGT
TGCTGAGGGTATCGATGATGAGAAAGAACTAGAAGAAAATAGAGCCCGGC
TTTGCCAAGNTAGGTCATAACTTAA
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