FC868696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_XENTR (Charged multivesicular body protein 3 OS=Xenopus tropicalis GN=vps24 PE=2 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 1.457e-37 Identity = 83/216 (38.43%), Postives = 129/216 (59.72%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V S+K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM++ SKEM KAG+IEE + D + D +D++L I + P V + + AA +E ++E++LE ++RL RS Sbjct: 12 PKDLVNEWSLKIRKEMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKVTDALPEPEITGAMAASDE-------EEEEDLEAMQSRLAALRS 220
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_DICDI (Charged multivesicular body protein 3 OS=Dictyostelium discoideum GN=chmp3 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32 Identity = 74/189 (39.15%), Postives = 115/189 (60.85%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAI--AGETAAQLP-EAVRKERVKQSAQ 618 KP P++L++ W+R+LR+E R ++ Q+R I +EK + IK+ K D SAK+LA+E+V SRK R+Y KAQMNS+SM L ++A+ + G+L KS E+MK++N+L+K PE+ M EMTKAG++EE ++D D + V+K++ I +G + P E ++E V Q Q Sbjct: 7 KPTPEELVKKWKRELRREDRGLDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEMEVNKIMDEILVSGPQVSSAPLETHQQEEVVQEKQ 193
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21 Identity = 66/220 (30.00%), Postives = 112/220 (50.91%), Query Frame = 1 Query: 43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARL 702 MN+ KPNP+++LR+ +R++ Q R IE++I +Q EEK + IK AK + + K LA++L+R R+ + L ++AQM I+ H A + + + M ++ M + A M+EF K+ + + E ++D++D ALD+ ++VL I + A+QL A + + + A ED + GID ELE+ A L Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKA--------EDVGSSGID---ELEKRLAAL 209
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS24_SCHPO (Vacuolar protein sorting-associated protein 24 OS=Schizosaccharomyces pombe GN=vps24 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21 Identity = 46/133 (34.59%), Postives = 88/133 (66.17%), Query Frame = 1 Query: 64 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEE 462 P PQ+ R WQ +R+E R ++RQ+ ++ K + +K AK++D+++ + LA+E+ R+ + RL E+KA + S+S+ L + +A+ + G + S ++M+ V++L++ P+++ TM+ S E+TKAGV+EE Sbjct: 11 PTPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEE 143
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS24_YEAST (Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20 Identity = 59/208 (28.37%), Postives = 110/208 (52.88%), Query Frame = 1 Query: 64 PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687 P+P++ R + LR+ RNIE+ +R++ + Q+ IK +AK+ND+ + + A+EL + K +R+Y ++AQ++S+ M + E++ + + SA +M+ VN+L++ P++ TM E KE+ K+G+I E V+D +++ D V + + E ++ E E+ K Q + + I DEK EE Sbjct: 11 PDPKEQQRRIRSVLRKNGRNIEKSLRELTVLQNKTQQLIKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKIDEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGD-----------VGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPTVELAANEEEQEIPDEKVDEE 207
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18 Identity = 57/199 (28.64%), Postives = 98/199 (49.25%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAE 657 K ++++ R+LR R I R ++++E+ ++ IK AK + + K LA++LV+ RK NR Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ +A R SA TS+A+ D E Sbjct: 7 KKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIE 205
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17 Identity = 50/181 (27.62%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA 585 M + + P+++LR+ QR L + R I+R+ +Q +EK + IK AK+ ++SAK +A++LVR+R + + YE K Q+ ++S+ + + + + M +N M P+ M EF ++ K + EE +ND +D ++ +++VL I + A+QL +A Sbjct: 1 MFLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDA 181
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17 Identity = 61/222 (27.48%), Postives = 108/222 (48.65%), Query Frame = 1 Query: 43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSA--QTSRAAQEEDAVAEGIDDEKELEENRARL 702 MN+ K K P+ LR +R++ R IER+I +Q EEK + IK AK + ++ K LA++LVR R+ + L ++AQ+ ++ H A + + + M +N M + A +++F K+ + + E +++A+D LD ++VL I A+QL A + ++A S AA +++ + +D ELE+ A L Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVD---ELEKRLASL 219
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17 Identity = 63/225 (28.00%), Postives = 112/225 (49.78%), Query Frame = 1 Query: 40 VMNMIKPK-PNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKS-AEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAE---GIDDEKELEENRAR 699 +MN I K P +LLR+ +R L + R IER+ + +Q +EK + IK AK+ + + K +A++L+R+R + + Y+ K+Q+ +S+ + +++ + +G K + M +N M P + MQEF ++ K ++ E + DA+D AL+ V +VL I + +L A V A ++ Q E AE GID + + + R Sbjct: 1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNA-PSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16 Identity = 55/205 (26.83%), Postives = 99/205 (48.29%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEK 675 K +++D ++L+ + R I R ++++EK ++ IK AK + + K LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ +A + SA S++ GI DE+ Sbjct: 7 KKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKST--------GISDEE 203 The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bpback to top |