FC868696

Overview
NameFC868696
Unique NameFC868696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++VL  I  E + ++ +A    R   SA TS+A   ++ +
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++VL  I  E + ++ +A    R   SA TS+A   ++ +
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 53/197 (26.90%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++VL  I  E + ++ +A    R   SA TS+A   ++ +
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 54/205 (26.34%), Postives = 98/205 (47.80%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEK 675
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D+          V++VL  I  E + ++ +A    +   S   S+++        GI DE+
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSS--------GISDEE 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 1
Query:   43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDE 672
            M  +  K     ++++  ++LR   R I R    ++++EK ++  IK  AK  +  + K LA++LV+ RK   R Y   +++ S+S       +  +  G +  + + M+ VN  M   +   T+Q F KE  K  + EE +ND +D   +           V++VL  I  E + ++  A    R   SA T++        A+GI DE
Sbjct:    1 MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAK--------ADGISDE 202          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 52/197 (26.40%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651
            K     ++++  R+LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV  RK   R +   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + EE +ND +D   D           V++VL  I  E + ++ +A    R   SA TS++   ++ +
Sbjct:    7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKSTISDEEI 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.561e-15
Identity = 50/209 (23.92%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687
            +  P++LLR  QR L +  R ++R+ + ++++EK +   IK  AK+  + + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+             D V++ +  E    L + +        + +   A++ +A A   D + +LEE
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEES----DAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALADADADLEE 212          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 52/197 (26.40%), Postives = 95/197 (48.22%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA--VRKERVKQSAQTSRAAQEED 645
            K     ++R+  ++LR   R I R    ++++EK ++  IK  AK  +  + + LA++LV+ RK   R Y   +++ S+S       +  +  G ++ +A+ M+ VN  M   +   TMQ F KE  K  + +E +ND +D   D+          V++VL  I  E + ++ +A    K     SA  S+   +E+
Sbjct:    7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEE 203          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 56/218 (25.69%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  + + K +A++LVR+R+ V +    +A + ++S+ +       S+A+A     +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+            V +VL  +      +L   +       +A   RAA+   A+A+   D +E  +N  R
Sbjct:    8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDEL-ATLPPPGGSLAAGEGRAAEAAAALADADADLEERLKNLRR 219          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVLTAIAGETAAQL 576
            PQ+ L+  QR L +  R +ER+ R ++ ++K +   IK +AK   +++AK  A++LVR+R  + +    KAQ+ +IS+ +    +  +    ++++  ++  +N  M  P++     EF K+    G  +EF+++A+D  + D           V+KVL  I  +  +QL
Sbjct:   14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183          
The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHM2B_PONAB7.037e-1627.41Charged multivesicular body protein 2b OS=Pongo ab... [more]
CHM2B_HUMAN7.037e-1627.41Charged multivesicular body protein 2b OS=Homo sap... [more]
CHM2B_MOUSE1.568e-1526.90Charged multivesicular body protein 2b OS=Mus musc... [more]
CHM2B_XENTR2.674e-1526.34Charged multivesicular body protein 2b OS=Xenopus ... [more]
CHM2B_DANRE3.492e-1526.19Charged multivesicular body protein 2b OS=Danio re... [more]
CHM2B_BOVIN3.492e-1526.40Charged multivesicular body protein 2b OS=Bos taur... [more]
CHM2A_XENLA4.561e-1523.92Charged multivesicular body protein 2a OS=Xenopus ... [more]
CH2BB_XENLA1.016e-1426.40Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2A_CHICK1.733e-1425.69Charged multivesicular body protein 2a OS=Gallus g... [more]
DID4_YEAST6.586e-1427.06DOA4-independent degradation protein 4 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC31003F05EF AbioticL1 Citrus clementina cDNA clone C31003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bp
GGAGAAAAATTAGAAAAAAAAGCTCAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACCTGAGCTCTGCCAAGTCTCTGGCTCAGGAACTTGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AGGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACAGCAGCACAACTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTGT
TGCTGAGGGTATCGATGATGAGAAAGAACTAGAAGAAAATAGAGCCCGGC
TTTGCCAAGNTAGGTCATAACTTAA
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