FC868696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14 Identity = 48/209 (22.97%), Postives = 101/209 (48.33%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687 + P+++LR QR L + R ++R+ + ++++EK + IK AK+ + + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF K+ + EE +NDA+D A+ D V++ + E L + + + + A++ + A D + +LEE Sbjct: 8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEES----DAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADADADLEE 212
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 49/213 (23.00%), Postives = 102/213 (47.89%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699 + P+++LR QR L + R+++R+ + ++++EK + IK AK+ + + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF ++ + EE +NDA+D A+ V +VL + G T + + S + A+ + +A+ D +E N R Sbjct: 8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDEL-GLTLSDELSNLPATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 53/222 (23.87%), Postives = 104/222 (46.85%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGI-DDEKELEENRARL 702 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +VL + +L S + ++ +A A + D + +LEE L Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNL---PSTGGSLSVAAGGKKAEATASALADADADLEERLKNL 219
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 55/223 (24.66%), Postives = 106/223 (47.53%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIA---GETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + + +A++LVR+R+ V + +A + ++S+ + +T+ N A+ MK +N +K P++ M EF ++ + EE +NDA+D A+ V +VL + + + LP V + + AA A+A+ D +E +N R Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAA--ASALADADADLEERLKNLRR 221 The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bpback to top |