FC868696

Overview
NameFC868696
Unique NameFC868696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 48/209 (22.97%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687
            +  P+++LR  QR L +  R ++R+ + ++++EK +   IK  AK+  + + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF K+     + EE +NDA+D A+             D V++ +  E    L + +        + +   A++ +  A   D + +LEE
Sbjct:    8 RKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEES----DAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADADADLEE 212          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 49/213 (23.00%), Postives = 102/213 (47.89%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699
            +  P+++LR  QR L +  R+++R+ + ++++EK +   IK  AK+  + + K +A++LVR+R+ V +    +A + ++S+ +    +       +    + M  +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL  + G T +     +       S    + A+ +  +A+   D +E   N  R
Sbjct:    8 RKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDEL-GLTLSDELSNLPATGGSLSVAAGKKAEPQPTLADADADLEERLNNLRR 219          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 53/222 (23.87%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGI-DDEKELEENRARL 702
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  + + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL  +      +L           S   +   ++ +A A  + D + +LEE    L
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNL---PSTGGSLSVAAGGKKAEATASALADADADLEERLKNL 219          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 55/223 (24.66%), Postives = 106/223 (47.53%), Query Frame = 1
Query:   61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMK-------LVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIA---GETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699
            +  P++LLR  QR L +  R ++R+ + ++ +EK +   IK  AK+  + + + +A++LVR+R+ V +    +A + ++S+ +       +T+   N  A+ MK        +N  +K P++   M EF ++     + EE +NDA+D A+            V +VL  +     +  + LP       V    + + AA    A+A+   D +E  +N  R
Sbjct:    8 RKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKI-------QTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAA--ASALADADADLEERLKNLRR 221          
The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CHM2A_XENTR6.586e-1422.97Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_DANRE8.602e-1423.00Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_MOUSE1.916e-1323.87Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN1.916e-1324.66Charged multivesicular body protein 2a OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC31003F05EF AbioticL1 Citrus clementina cDNA clone C31003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bp
GGAGAAAAATTAGAAAAAAAAGCTCAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACCTGAGCTCTGCCAAGTCTCTGGCTCAGGAACTTGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AGGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACAGCAGCACAACTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTGT
TGCTGAGGGTATCGATGATGAGAAAGAACTAGAAGAAAATAGAGCCCGGC
TTTGCCAAGNTAGGTCATAACTTAA
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