FC868700 | Citrus Genome Database

Overview


Name	FC868700
Unique Name	FC868700
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	706

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.019e-14
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPG 662
            ++P   GE +I C ++ T+P+V+  +G K++ LS E Y LK  +G   +C+SGFM  D+PPPG
Sbjct:  315 AVPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPG 377

HSP 2 Score: 32.7278 bits (73), Expect = 2.019e-14
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  378 GPLWILGDVFIGCYY 392

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 4.435e-14
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 3

Query:  345 ENVSAGDSAVCS-ACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 659
            ++V  GD+  C+  CE  +      L      E  ++ IN+     P   GE ++DC  IP +P +SF +G K F+L    Y+L+  +    +C+SGFM  D+PPP
Sbjct:  253 DSVKVGDTEFCNNGCE-AIADTGTSLIAGPVSE--VTAINKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPP 355

HSP 2 Score: 32.3426 bits (72), Expect = 4.435e-14
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  357 GPLWILGDVFIGKYY 371

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 5.758e-14
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 3

Query:  336 VEKENVSAGDS-AVCSA-CEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 659
            +  ++++ GD  ++C+  CE  V    + +     + K L    +   + P   GE +++C  +P++P +SFT+G +++ L+ EQYILK  +    +C+SGFM  D+P P
Sbjct:  258 IRVDSMAVGDQLSLCTGGCEAIVDSGTSLITGPSVEVKALQ---KAIGAFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAP 364

HSP 2 Score: 33.8834 bits (76), Expect = 5.758e-14
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVFMG Y+
Sbjct:  366 GPLWILGDVFMGQYY 380

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.780e-14
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPG 662
            ++P   GE +I C ++P++P+V+ T+G K + LS E Y LK  +    +C+SGFM  D+PPPG
Sbjct:  252 AVPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPG 314

HSP 2 Score: 31.9574 bits (71), Expect = 5.780e-14
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  315 GPLWILGDVFIGRYY 329

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.767e-13
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPG 662
            ++P   GE +I C ++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPPG
Sbjct:  295 AVPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPG 357

HSP 2 Score: 31.9574 bits (71), Expect = 2.767e-13
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  358 GPLWILGDVFIGRYY 372

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.075e-13
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 3

Query:  456 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPG 662
            +++   ++P   GE +I C ++ ++P V+  +G K + LSPE Y LK  +    VC+SGFM  D+PPPG
Sbjct:  284 LHKAIGAVPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPG 352

HSP 2 Score: 29.6462 bits (65), Expect = 6.075e-13
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2

Query:  662 GPLWILGDVFMG 697
            GPLWILGDVF+G
Sbjct:  353 GPLWILGDVFIG 364

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.863e-13
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 659
            ++P   GE +I C ++ ++P V   +G K + L P++YILK  +G   +C+SGFM  D+PPP
Sbjct:  315 AVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPP 376

HSP 2 Score: 32.3426 bits (72), Expect = 7.863e-13
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  378 GPLWILGDVFIGSYY 392

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.021e-12
Identity = 24/62 (38.71%), Postives = 41/62 (66.13%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 659
            ++P   GE +I C ++ ++P ++F +G + + L PE+YILK  +    +C+SGFM  D+PPP
Sbjct:  312 AVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPP 373

HSP 2 Score: 32.7278 bits (73), Expect = 1.021e-12
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  375 GPLWILGDVFIGCYY 389

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.236e-12
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 3

Query:  474 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPP 659
            ++P   GE +I C ++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+PPP
Sbjct:  317 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPP 378

HSP 2 Score: 31.9574 bits (71), Expect = 2.236e-12
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  380 GPLWILGDVFIGRYY 394

[Close]

BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 6.662e-11
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 3

Query:  444 VLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGI-AEVCISGFMAFDLPPP 659
            V+  I      +P   GE  ++C +IP++PN++F +G + F+L  + YIL+   G     C+SGFM  D+P P
Sbjct:  291 VIKKIQHKIGGIPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAP 363

HSP 2 Score: 30.4166 bits (67), Expect = 6.662e-11
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 2

Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G ++
Sbjct:  365 GPLWILGDVFIGRFY 379

The following BLAST results are available for this feature:

BLAST of FC868700 vs. ExPASy Swiss-Prot

BLAST of FC868700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21


Match Name	E-value	Identity	Description
CATD_CANFA	2.019e-14	42.86	Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1	[more]
ASPP_AEDAE	4.435e-14	33.02	Lysosomal aspartic protease OS=Aedes aegypti GN=AA...	[more]
CATD_CHIHA	5.758e-14	30.00	Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV...	[more]
CATD_PIG	5.780e-14	42.86	Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2	[more]
CATD_BOVIN	2.767e-13	42.86	Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2	[more]
CATD_SHEEP	6.075e-13	39.13	Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ...	[more]
CATD_MOUSE	7.863e-13	40.32	Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1	[more]
CATD_RAT	1.021e-12	38.71	Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1	[more]
CATD_HUMAN	2.236e-12	40.32	Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1	[more]
ASP3_CAEEL	6.662e-11	35.62	Aspartic protease 3 OS=Caenorhabditis elegans GN=a...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31003F09EF AbioticL1 Citrus clementina cDNA clone C31003F09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868700 ID=FC868700; Name=FC868700; organism=Citrus clementina; type=EST; length=706bp
TATGTTCCTGTTTCAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATA
TTAATTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCAT
TGTGGACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTG
AAATCAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAG
CTAGTTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGG
GCTACTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATG
GCGCTGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAAC
GTATCAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGT
TTGGGTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCA
GTTATATAAATGAGCTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCA
ATTATTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCAT
CGGAGACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCG
GAGAAGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTG
CCTCCTCCAGGGGTCCTCTGTGGATTCTGGGAGATGTATTCATGGGGGTT
TATCAC