FC868700

Overview
NameFC868700
Unique NameFC868700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868700 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.662e-11
Identity = 32/109 (29.36%), Postives = 54/109 (49.54%), Query Frame = 3 
Query:  336 VEKENVSAGDSAVCSACEMTVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPG 662
            ++  +V+ G +     CE  +V     L    TKE  +  +     + P   G+ +I C +I ++P V+  +G K + L+ EQY+ K       +C+SGF   D+PPPG
Sbjct:  262 MDSVDVANGLTLCKGGCE-AIVDTGTSLITGPTKE--VKELQTAIGAKPLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPG 367

HSP 2 Score: 32.3426 bits (72), Expect = 6.662e-11
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2 
Query:  662 GPLWILGDVFMGVYH 706
            GPLWILGDVF+G Y+
Sbjct:  368 GPLWILGDVFIGPYY 382
The following BLAST results are available for this feature:
BLAST of FC868700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CATD_CHICK6.662e-1129.36Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003F09EF AbioticL1 Citrus clementina cDNA clone C31003F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868700 ID=FC868700; Name=FC868700; organism=Citrus clementina; type=EST; length=706bp
TATGTTCCTGTTTCAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATA
TTAATTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCAT
TGTGGACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTG
AAATCAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAG
CTAGTTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGG
GCTACTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATG
GCGCTGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAAC
GTATCAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGT
TTGGGTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCA
GTTATATAAATGAGCTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCA
ATTATTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCAT
CGGAGACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCG
GAGAAGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTG
CCTCCTCCAGGGGTCCTCTGTGGATTCTGGGAGATGTATTCATGGGGGTT
TATCAC
back to top