FC868711

Overview
NameFC868711
Unique NameFC868711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 45/135 (33.33%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  320 VTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + + ++++T +L  K     + +L +V+G+  PGR+ A+MGPSG+GKTT L+ LAG+     R   +GL+ +NG+  S  +YK    +V Q+D+    LTV E L  +A  +L   +S  ++   +  ++  LGL
Sbjct:  463 IEVAFKDLTLTLKGKH----KHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTR---TGLILINGRNDSINSYKKITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMSKADKVLIIERVIESLGL 590          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 60/205 (29.27%), Postives = 105/205 (51.22%), Query Frame = 2
Query:   92 NFGGNKVGQVVAGIGGNGVGQVLAAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            N G  + G++V  + G+ + +     A S    +  GP    +   D A   ++E+     + G  + P + ++F     W+++T  +  K  K  R +L++V G  KPG++ A+MG SG+GKTTLLN L+ ++     +   G   VNG    S+      YV+Q+D+     TVRE L  +A L+    +S +E+D+YV+ ++
Sbjct:  786 NKGAMQKGEIVLFLKGS-LKKHKRKTAASNKGDIEAGPVAGKLDYQDEAEAVNNEKFTEKGSTGSVDFPENREIF----FWRDLTYQV--KIKKEDRVILDHVDGWVKPGQITALMGASGAGKTTLLNCLSERVTTG--IITDGERLVNGHALDSSFQRSIGYVQQQDVHLPTSTVREALQFSAYLRQSNKISKKEKDDYVDYVI 981          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 60/178 (33.71%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  260 NDVAEANGDGEA----------PVDGKVFPVTIRWQNITCSLSDKSSKSVRF-------------LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            N+++ ANGD +            VD K +   ++ Q      +D  S +                +LNNVSG  + G L+A+MGPSGSGK+TLL++LA +        ++G L VNGK    +AYK   +YV QED+     TV ETL   A+L+LP +  + E+ + V  ++  +GL
Sbjct:    8 NNISLANGDSKGVQLTFKNIVYKVDNKKYKKLVKKQEKAKKKNDTESSTGDMNTGVSTTIEKELTILNNVSGVIEKGELVALMGPSGSGKSTLLDILAQRKSTG---KITGQLLVNGK-EIGEAYKKYCSYVTQEDVLLQTSTVFETLKFYADLKLPGVSEI-EKIKRVEQIIEDIGL 180          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG4_DICDI (ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 47/113 (41.59%), Postives = 72/113 (63.72%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +L+NVSG  + G ++A+MGPSGSGK+TLL++LA +        ++G + VNGK    +AYK   +YV QE++F    TV ETL   A+L+LP++    E+D  +  +L  +GL
Sbjct:  235 ILSNVSGIVEKGEMVALMGPSGSGKSTLLDILANRKSTGT---ITGKILVNGK-EIGEAYKMFCSYVTQEEVFLETSTVYETLKFHADLRLPDMTDT-EKDIRIKQVLKDVGL 342          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 47/135 (34.81%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  326 IRWQNITCSLS-DKSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV 721
            ++W+++   +   K  K+ R  LLN ++G  KPG LLA+MGPSG+GK+TLL+VLA +       H  G + +NG+  +    +  AYV Q D+     TV+E +  +A+ +LP  +  EE+ ++V +++  L L+
Sbjct:  715 MQWKDLVYEVDVKKDGKNQRLRLLNEINGYVKPGMLLALMGPSGAGKSTLLDVLANRKTGG---HTKGQILINGQERTKYFTRLSAYVEQFDVLPPTQTVKEAILFSAKTRLPSDMPNEEKIKFVENIIETLNLL 846          

HSP 2 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +N++ S+  +     R +L++++   KPG ++ I+G  G GKT+++  LA QL +     +SG L  NGK ++   +    AYV Q D   +  TVRET   +A+LQ+ E  S EE++  V+ +L  L L
Sbjct:   56 RNLSMSIGTEKKGDKRNILSDLNFFLKPGSMVLILGSPGCGKTSVMKALANQLHSET---VSGSLLFNGKAANKSTHHRDVAYVVQGDHHMAPFTVRETFKFSADLQMSEGTSEEEKNARVDYILKTLDL 182          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  380 RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAY--KFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + LL N SG A PG LLA+MG SG+GKTTLLN  A +     ++  S +  +NG P   K    + AYV+Q+DLF   LT RE L   A +++P  ++ +++ + V+ ++  L L
Sbjct:  101 KHLLKNDSGVAYPGELLAVMGSSGAGKTTLLNASAFRSSKGVQISPSTIRMLNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSL 215          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            S + ++ ++NN +G  +PG L+A+MG SGSGKTTL++ LA +  A     + G + +NG+      ++ + YV Q+DLF   LTV E L+  A L+L   +S EER   +  LL + GL+S
Sbjct:   83 SGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAG--TVVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLS 201          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            LL+NVSG   PG L A++G SG+GKTTL++VLAG+       +  G + ++G P   + +     YV Q D+   Q+TV E+L  +A L+LP+ ++ E++ E+V  ++
Sbjct:  853 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVM 957          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCGF_DICDI (ABC transporter G family member 15 OS=Dictyostelium discoideum GN=abcG15 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  332 WQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            WQ++  S+      +++ LL+++ G  KPG++ A+MG SG+GKTTLL+VLA +        + G   +NGKP      +   YV Q D+    LTVRETL  +A+L+    +S+EE+ +YV  +L
Sbjct:  844 WQHMYYSVPI-GGNTMKLLLDDIQGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTTG---QVQGTTLLNGKPLEIDFERITGYVEQMDVLNPALTVRETLRFSAKLRGEPTISLEEKFKYVEQVL 964          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +L N++G  KPG L AI+GP+G GK++LL+VLA +    P   LSG + +NG P  +N      YV Q+D+    LTVRE L  +A L+LP  ++  E++E +N ++ +LGL
Sbjct:   63 ILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAAR--KDPH-GLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGL 170          
The following BLAST results are available for this feature:
BLAST of FC868711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
WBC30_ARATH8.602e-1433.33Putative white-brown complex homolog protein 30 OS... [more]
CDR1_CANAL8.602e-1429.27Multidrug resistance protein CDR1 OS=Candida albic... [more]
ABCGC_DICDI8.602e-1433.71ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG4_DICDI8.602e-1441.59ABC transporter G family member 4 OS=Dictyostelium... [more]
ABCG2_DICDI8.602e-1434.81ABC transporter G family member 2 OS=Dictyostelium... [more]
WHITE_CERCA1.916e-1339.13Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
SCRT_DROME1.916e-1338.84Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
AB31G_ARATH2.503e-1337.96ABC transporter G family member 31 OS=Arabidopsis ... [more]
ABCGF_DICDI3.269e-1337.60ABC transporter G family member 15 OS=Dictyosteliu... [more]
ABCG2_PIG4.269e-1341.96ATP-binding cassette sub-family G member 2 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC31003G11EF AbioticL1 Citrus clementina cDNA clone C31003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868711 ID=FC868711; Name=FC868711; organism=Citrus clementina; type=EST; length=725bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGGCAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGGAAGAGAGAGATGAATATGTGAACAGTCTT
TTATTCAAGCTGGGCTTGGTCAGTT
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