FC868711

Overview
NameFC868711
Unique NameFC868711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCGE_DICDI (ABC transporter G family member 14 OS=Dictyostelium discoideum GN=abcG14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  299 VDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL---MASPRLHLSGL-LEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            +DG +F     WQNI  ++  K     R LLNN+ G  KPG++ A+MG SG+GKTTLL+VLA +    +     HL+G  LE++ +  +       YV Q D+    LTVRE L  +A+L+    +S+EE+ +YV  +L
Sbjct:  800 MDGGIFT----WQNIRYTV--KVPGGERLLLNNIEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGVVEGDSHLNGRELEIDFERIT------GYVEQMDVHNPGLTVREALRFSAKLRQEPEVSLEEKFKYVEHVL 926          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG--KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +L+N++G  KPG L AI+GP+G GK++LL+VLA +   S    LSG + +NG  +P++ K     YV Q+D+    LTVRE L  +A L+LP  ++  E++E +N ++ +LGL
Sbjct:   63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG---LSGDVLINGALRPTNFKCNS-GYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGL 170          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +L N++G  KPG L AI+GP+G GK++LL++LA +    P   LSG + +NG P  +N      YV Q+D+    LTVRE L  +A L+LP  ++  E++E +N ++ +LGL
Sbjct:   62 ILANINGVMKPG-LNAILGPTGGGKSSLLDILAAR--KDPH-GLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGL 169          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 72/233 (30.90%), Postives = 113/233 (48.50%), Query Frame = 2
Query:  143 GVGQVLAAVAV-SLLFRLFT------GPGPALVTDDD------SAYGDD--------DERNDVAEAN-GDGEAP-----VDGKVFPVT---IRWQNITCS------LSDKSSKSVRFLL-NNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            GVG +L  + + ++LF LF       G G A+V++++      +  G++        D +N  ++AN G GE         G V P T   I + NI  S      + DK     R LL   VSG  +PG L A+MG SG+GKTTL++VLAG+       ++ G + ++G P   + +     Y  Q D+    +TV E+L  +A L+LP  +  E R  +V  ++  + L S
Sbjct:  755 GVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTS 984          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  356 SDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            S  S  S    + N+S + + G++LAI+G SG G+ +LL+V+ G+         SG + +NG+PS+ +  +   A+VRQ D     LTVRETL+  A+++LP   S  +RD+ V  ++ +L L
Sbjct:   78 SHSSQDSCELGIRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMK--SGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRL 198          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS-SNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +L+N++G  KPG L AI+GP+G GK++LL+VLA +   S    LSG + +NG P  +N      YV Q+D+    LTVRE L  +A L+L   ++  E++E +N ++ +LGL
Sbjct:   63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG---LSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGL 170          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 2
Query:  317 PVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNG--KPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            P+T  +Q++   +     K ++ LL++V+G  KPG L A+MG SG+GKTTLL+VL+G+     R  + G +EV G  K     +    Y  Q D+    LTV+E+L  +A L+LP  +S E +   VN +L
Sbjct:  795 PLTFTFQDVQYFIETPQGKKLQ-LLSDVTGAFKPGVLTALMGVSGAGKTTLLDVLSGR---KTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTVQESLKYSAWLRLPCNISSETKSAIVNEVL 921          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 45/131 (34.35%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  317 PVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            P+T+ +QN+   +     K+ R LL++++G  KPG L ++MG SG+GKTTLL+VL+G+     R  + G ++V G P   + +     Y  Q D+    +TV E+L  +A L+LP  +  + ++E V  +L
Sbjct:  805 PLTVTFQNVQYYIETPQGKT-RQLLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGR---KTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLPYNIDSKTKNELVKEVL 931          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCGB_DICDI (ABC transporter G family member 11 OS=Dictyostelium discoideum GN=abcG11 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  269 AEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL---MASPRLHLSGL-LEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            A +N      +DG +F     WQNI  ++  K     R LL+N+ G  KPG++ A+MG SG+GKTTLL+VLA +    +     HL+G  LE++ +  +       YV Q D+    LTVRE L  +A+L+    +S+EE+ +YV  +L
Sbjct:  793 ATSNMKDTLHMDGGIFT----WQNIRYTV--KVPGGERLLLDNIEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGVVEGDSHLNGRELEIDFERIT------GYVEQMDVHNPGLTVREALRFSAKLRQEPEVSLEEKFKYVEHVL 929          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 41/112 (36.61%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  389 LNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + N+S + + G++LAI+G +G G+ TLL+V+ G+         SG + +NG+PS+ +  +   A+VRQ+D     LTVRETL+  A+++LP+  S  +RD+ V  ++ +L L
Sbjct:  110 IRNLSFKVRSGQMLAIIGSAGCGRATLLDVITGRDHGGKMK--SGQIWINGQPSTPQLIQKCVAHVRQQDQLLPNLTVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRL 219          
The following BLAST results are available for this feature:
BLAST of FC868711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ABCGE_DICDI5.576e-1338.85ABC transporter G family member 14 OS=Dictyosteliu... [more]
ABCG2_MACMU7.282e-1341.59ATP-binding cassette sub-family G member 2 OS=Maca... [more]
ABCG2_BOVIN7.282e-1341.07ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
PDR7_ORYSJ9.511e-1330.90Putative pleiotropic drug resistance protein 7 OS=... [more]
ABCG8_MOUSE9.511e-1335.77ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
ABCG2_HUMAN1.242e-1241.07ATP-binding cassette sub-family G member 2 OS=Homo... [more]
AB43G_ARATH1.242e-1237.40ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB30G_ARATH1.242e-1234.35ABC transporter G family member 30 OS=Arabidopsis ... [more]
ABCGB_DICDI1.622e-1236.91ABC transporter G family member 11 OS=Dictyosteliu... [more]
ABCG8_RAT1.622e-1236.61ATP-binding cassette sub-family G member 8 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionC31003G11EF AbioticL1 Citrus clementina cDNA clone C31003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868711 ID=FC868711; Name=FC868711; organism=Citrus clementina; type=EST; length=725bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGGCAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGGAAGAGAGAGATGAATATGTGAACAGTCTT
TTATTCAAGCTGGGCTTGGTCAGTT
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