FC868711

Overview
NameFC868711
Unique NameFC868711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 50/171 (29.24%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  197 TGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            T PG  +V   +  Y   +E N   +              P+ ++ Q +T   +DK       LL+ +SG  +PG L A+MG SG+GKTTL++VL+G+       ++ G + ++G P +   +     Y  Q D+   Q+TVRE+L  +A L+LP+ ++ +E+  +V+ ++
Sbjct:  893 TAPGRGMVLPFEPLYMSFNEINYYVD-------------MPLEMKSQGVT---ADKLQ-----LLSGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YIEGEIYISGYPKNQATFARISGYCEQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFVDEVM 1039          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  332 WQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            W+NI  ++     K+ + LL++V G  KPG++ A+MG SG+GKTTLL+VLA +        + G   +NGK       +   YV Q D+    LTVRE L  +A+L+    +S+EE+ +YV  +L
Sbjct:  824 WENIKYTVP--VGKTQKLLLDDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTLGT---VQGKTFLNGKALEIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVSLEEKYDYVEHVL 943          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  356 SDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            S     S    + N+S + + G++LAI+G SG G+ +LL+V+ G+         SG + +NG+PSS +  +   A+VRQ +     LTVRETL+  A+++LP   S  +RD+ V  ++ +L L
Sbjct:   77 SPSCQNSCELGIQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIK--SGQIWINGQPSSPQLVRKCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRL 197          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  317 PVTIRWQNITCSLS---DKSSKSVR----FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            P+ + ++NIT S+    +   K +R     LLN +SG  +PG L A+MG SG+GKTTL++VLAG+       ++ G + V+G P    ++     Y  Q D+    LTV E+L  +A L+LP  +    R+ ++  ++
Sbjct:  818 PLYMTFENITYSVDTPKEMKEKGIRENKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKNTG---YIQGEIYVSGFPKKQDSFARVSGYCEQSDIHSPLLTVYESLLYSAWLRLPPDIDTHTRELFIEEVM 952          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 59/198 (29.80%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  146 VGQVLAAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKS---SKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            VG  L   AV++   L  G  P ++T            N + EA      P   K   V I +  ++ S+ +      +  + LL  +SG+     L+ IMGPSG+GK+T +N+LAG   +     + G + VNG+P   + ++    Y+ Q+D+    LTV E + ++A L+L E    E + E V  +L  LGL+S
Sbjct:    9 VGCGLGPGAVAMAVTLEDGAEPPVLTTHLKKV-----ENHITEAQRFSHLP---KRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESG----MKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSE--KQEVKKELVTEILTALGLMS 192          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  257 RNDVAEANGDGEAPVDGKVFPVTIR---------WQNITCSLSDKSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            R+  AEA+G G     G V P T           + ++   + D+     R  LL  V+G  +PG L A+MG SG+GKTTL++VLAG+       ++ G + ++G P   + +     Y  Q D+   Q+TVRE+L  +A L+LP+ +  +E+  +V+ ++
Sbjct:  842 RDSAAEASG-GAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVM 998          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  383 FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            +LLNN+S   KPGR++ +MG  G+GK+ LL VL  +L    +  + G L+ N        ++    +V Q+D   + LTVRETL  +A+  + E +S EE+ E V+ +L +LGL
Sbjct:  125 YLLNNISFTMKPGRMILLMGIPGAGKSLLLKVLGNRL---GKGKIEGELKFNNHEVDETTHQRDTIFVSQDDRHIALLTVRETLEFSAKCNMGENVSQEEQSERVDLVLDQLGL 235          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 2
Query:  383 FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            F+L N++  + P ++LAI+GPSG+GK+TLL++LA +   +    L   + +N  PSS +    +YV Q D FF  LTV ET + +A L LP+ LS  +    V SLL +L L
Sbjct:   29 FILRNITLTSHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSILLNSVLIN--PSSYRKIS-SYVPQHDTFFPLLTVSETFTFSASLLLPKNLS--KVSSVVASLLKELNL 135          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  332 WQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASP---RLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            W+++  ++  K+SK  + +L NVSG  K   L A++G + SGK+ LL +L+ + +A      + LSGL     K   N   +  YVR+  LF S+ TVRETL L A L+  +  S+ E+  YV  ++  LGL
Sbjct:  760 WRDLNFTVVTKTSK--KQILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGL-----KNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGL 884          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            LLN+V G  KPG++ A+MG SG+GKTTLL+VLA +        ++G   +NGK  +    +   YV Q D+    LTVRE L  +A+L+    +S++++ EYV  +L
Sbjct:  856 LLNDVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMGT---VTGKCLLNGKELNIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPTVSLQDKYEYVEQVL 959          
The following BLAST results are available for this feature:
BLAST of FC868711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
PDR15_ORYSJ8.051e-1229.24Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
ABCG9_DICDI8.051e-1237.60ABC transporter G family member 9 OS=Dictyostelium... [more]
ABCG8_HUMAN8.051e-1234.96ATP-binding cassette sub-family G member 8 OS=Homo... [more]
AB38G_ARATH1.052e-1133.33ABC transporter G family member 38 OS=Arabidopsis ... [more]
ABCG4_HUMAN1.373e-1129.80ATP-binding cassette sub-family G member 4 OS=Homo... [more]
AB36G_ARATH1.373e-1131.68ABC transporter G family member 36 OS=Arabidopsis ... [more]
ABCG3_DICDI2.343e-1137.72ABC transporter G family member 3 OS=Dictyostelium... [more]
AB4G_ARATH3.059e-1141.07ABC transporter G family member 4 OS=Arabidopsis t... [more]
PDR1_SCHPO3.996e-1136.36ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
ABCGA_DICDI3.996e-1140.19ABC transporter G family member 10 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionC31003G11EF AbioticL1 Citrus clementina cDNA clone C31003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868711 ID=FC868711; Name=FC868711; organism=Citrus clementina; type=EST; length=725bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGGCAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGGAAGAGAGAGATGAATATGTGAACAGTCTT
TTATTCAAGCTGGGCTTGGTCAGTT
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