FC868712

Overview
NameFC868712
Unique NameFC868712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.496e-44
Identity = 84/216 (38.89%), Postives = 126/216 (58.33%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA V WG  +P  +E+I+V PPK+ EVRVK+L   +C TD    +G     +P ++GHE VG+VES G+EV  V+ GD VIP ++ +C+EC  C +   NLC++  +   G++ DGT+R + +G+ + H  + ST++EY V+D + V K+D    P  A  + CGF+TGYGAA K AKV                      +  GA++I+G
Sbjct:    6 KVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 1
Query:   49 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            ++ I CKA V W  G+PL +EEI+V PPK+ EVR+K+   +VCHTD     G  P   +P +LGHEG G+VES G+ V  +K GD VIP YI +C EC+ C +  TNLC K  +    GLM DGTSR + +G+ + H    ST+SEY V+    V K+DPS        L CG +TGYGAA   AKV+
Sbjct:    3 NKVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVE 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.963e-44
Identity = 86/216 (39.81%), Postives = 127/216 (58.80%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA V WG+ +P  +EEI+V PPK+ EVRVK+L   +C TD    +G     +P ++GHE VGVVES G+ V  V+ GD VIP ++ +C+EC  C +   NLC++  +   G++ DGT+R + +G+ + H  + ST++EY V+D + V KVD +  P  A  + CGF+TGYGAA K AKV                      +  GA++I+G
Sbjct:    6 KVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGSMVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLCIRSDLTGCGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKVTPGSTCVVFGLGGVGLSVIMGCKAAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 177.178 bits (448), Expect = 7.788e-44
Identity = 91/219 (41.55%), Postives = 126/219 (57.53%), Query Frame = 1
Query:   49 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            ++ I CKA V W  G+PL +EEI+V PPK+ EVR+K++  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K  +    GLM DGTSR + +G+ + H    ST+SEY V+    V K+DP         L CG +TGYGAA   AK++                     ++ GA++I+G
Sbjct:    3 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 94/219 (42.92%), Postives = 124/219 (56.62%), Query Frame = 1
Query:   46 NSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKIL 696
            + Q I CKA V W   +PL +EEI+V PPK+ EVR+K+L  +VCHTD     G  P   +P VLGHEG G+VES G+ V + K GD VIP YI +C EC+ C +  TNLC K  +    G+M DGTSR++ RG+ LYH    ST+SEY V+    + +V P   P     L CG +TGYGA    AKV+                     R+ GA++I+
Sbjct:    4 DGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGMMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVEPGSTCAIFGLGAVGLAAIMGCRVAGASRII 222          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 91/225 (40.44%), Postives = 129/225 (57.33%), Query Frame = 1
Query:   34 LTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            ++ +  Q I CKA V W  G+PL +EE+ V PP+  EVR+K+LY S+CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECK+C +C SE +N+C    I  + G+M+ DG SR S+ G+ +YH    ST+SEY V+    V K++P         LSCG +TG GA    AK  K                    R+ GA++I+G
Sbjct:    1 MSTTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIG 225          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 87/222 (39.19%), Postives = 127/222 (57.21%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            +  Q I CKA V W  G+PL +EE++V PP+  EVR+K+L+ S+CHTD+   E     PL+PR+ GHE  G+VES G+ V +++ GD V+P + GEC EC +C SE +N+C  L+      G++ DG SR S+ G+ +YH    ST+SEY V+ +  V K++P         +SCG +TG GA    AK  K                    R+ GA++I+G
Sbjct:    3 TTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIG 224          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 90/220 (40.91%), Postives = 126/220 (57.27%), Query Frame = 1
Query:   46 NSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            +++ I CKA V W  G+P+ +EE++V PPK+ EVR+K++  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K       GLM DGTSR + +G+ + H    ST+SEY V+    V K+DP         L CG +TGYGAA   AKV+                     ++ GA++I+G
Sbjct:    2 SAEVIKCKAAVAWEAGKPVSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPQTNLCQKIRTTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGAAVNTAKVEPGSTCAIFGLGGVGLAVIMGCKVAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 91/219 (41.55%), Postives = 126/219 (57.53%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            Q I CKA V W  G+PL +EE+ V PP+  EVR+K+LY S+CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECK+C +C SE +N+C    I  + G+M+ DG SR S+ G+ +YH    ST+SEY V+    V K++P         LSCG +TG GA    AK  K                    R+ GA++I+G
Sbjct:    7 QVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIG 225          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 88/219 (40.18%), Postives = 127/219 (57.99%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA V W  G+PL +EE++V PP++ EVRVK+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECK+C +C SE +NLC  L+  +    ++ DG SR ++ G+ ++H    ST+SEY VI    + K++P         LSCG +TG GA    AK  K                    RM GA++I+G
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCKSEESNLCDLLRINVDRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGLSTGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAGASRIIG 224          
The following BLAST results are available for this feature:
BLAST of FC868712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ADH7_RAT3.496e-4438.89Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADHX_RABIT5.963e-4447.34Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADH7_MOUSE5.963e-4439.81Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADHX_HUMAN7.788e-4441.55Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_MYXGL1.329e-4342.92Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH2_SOLTU1.329e-4340.44Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH1_ARATH1.329e-4339.19Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADHX_HORSE2.960e-4340.91Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADH3_SOLTU2.960e-4341.55Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH3_HORVU2.960e-4340.18Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]

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Properties
Property NameValue
Genbank descriptionC31003G12EF AbioticL1 Citrus clementina cDNA clone C31003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868712 ID=FC868712; Name=FC868712; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCGAGGCTGCGAAATCCCCAGCAATACTAACAATGAGCAATTC
ACAAGCCATAACGTGCAAAGCTGTGGTATGTTGGGGTTTAGGAGAGCCAT
TAAAGGTAGAGGAGATACAAGTAGAGCCTCCGAAATCAACTGAAGTTAGG
GTTAAGATGCTTTATGCCAGTGTTTGTCACACTGATATCCTTTGCTCTGA
AGGATTCCCAGCGCCTCTTTATCCTCGTGTTCTCGGGCACGAAGGTGTCG
GGGTGGTGGAGAGTGCTGGGGATGAAGTGAAAGAAGTGAAAGAAGGAGAT
ATTGTGATTCCAACTTATATTGGAGAATGTAAAGAATGTGAAAATTGCAC
ATCAGAAATGACCAATTTATGCCTAAAATATCCAATAGCACTGAACGGTT
TAATGCTTGATGGCACTTCAAGAATGTCCGTAAGAGGCCAAAAATTGTAT
CACATTTTTTCATGCTCCACTTGGTCTGAATATATGGTCATCGATGCCAA
TTATGTAGTCAAAGTTGATCCAAGCATTGATCCCTCGGATGCTAGCTTCC
TTTCATGTGGATTTACAACTGGTTATGGGGCGGCTTGGAAGGAAGCCAAA
GTTGACAAAGGATCTAGTGTTGCTGTTTTAGGGCTTGGTACTGTTGGATT
AGGGGCTGTTGATGGAGCCAGGATGCACGGGGCAGCTAAGATATTGGGAT
AGACAAGAACCATG
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