FC868712

Overview
NameFC868712
Unique NameFC868712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 81/189 (42.86%), Postives = 106/189 (56.08%), Query Frame = 1
Query:   49 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDK 609
            +  I  +A V +   +PL++ EI VE P+  EV ++  +  VCHTD     G  P  ++P VLGHEG GVV + G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM D T+R S +GQ +YH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV +
Sbjct:    7 NSTIKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKGLMPDCTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEANHEQVCLLGCGVTTGIGAVHNTAKVQE 195          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 80/185 (43.24%), Postives = 106/185 (57.30%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFP-APLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W  G PL +EEI V PPK  EVRVKM+ A +C TDI   +    AP  P ++GHEG G+VES G+ V  VK GD VI   + +C EC  C +   N+C +  ++   L  +G SR++ +G+  Y   +  T+SEY+VI    V KVD       A  + CGF TG+GAA   AKV
Sbjct:    6 KVIRCKAAVLWKPGAPLTMEEIDVAPPKGKEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEGVSTVKTGDKVIILCLPQCGECNTCLNSKNNICKEVRLSGTHLTSEGNSRITCKGKTTYQYITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.271e-35
Identity = 75/188 (39.89%), Postives = 109/188 (57.98%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLY-PRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +  + I CKA V W  G PL +EEI+V PPK+ EVR+KM+   VC TDI   +      + P ++GHEGVG+VES G+ V  V+ GD VI   I +C EC+ C +   N+C +  ++   L  +GTSR++ +G+ ++   +  ++SEY V+    V K+D          + CGF TGYGAA   AKV
Sbjct:    3 TQGKVIRCKATVLWKPGAPLAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFCPMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGAAINSAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 8.631e-35
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKIL 696
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++DGTSR + +G+ ++H    +T+SEY V+    V K+D +        + CGF+TGYG+A K  KV +                    +  GAA+I+
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGSICACVWSGRVGLSAIIGCKAAGAARII 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKIL 696
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++DGTSR + +G+ ++H    +T+SEY V+    V K+D +        + CGF+TGYG+A K  KV +                    +  GAA+I+
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVARGSICSCVWSGRVGLSAIIGCKAAGAARII 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 74/216 (34.26%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKIL 696
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++DGTSR + +G+ ++H    +T+SEY V+    V K+D +        + CGF+TGYG+A K  KV +                    +  GAA+I+
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCKHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDATSPLEKVCLIGCGFSTGYGSAVKVGKVARGSICSCVWSGRVGLSAIIGCKAAGAARII 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDIL-CSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLK-YPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            + I CKA V W   +PL +EEI+V+ P + E+R+K++   VCHTD+    EG     +P VLGHEG G+VES G  V E + G+ VIP +I +C EC  C S  TN C+K +      +M    +R + +G+K+      ST+S+Y V++   V K+DPS        L CG +TG+GAA   AKV+
Sbjct:    5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVE 191          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.070e-32
Identity = 77/183 (42.08%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            +A V    G+PL++ E+ +E PK+ EV V++    +CHTD     G  P  ++P +LGHEG GVV   G  V  VK GD VIP Y  EC++C +C S+ TNLC         GLM DGTSR S + G  + H   CST+S Y V+    V KV P        ++ CG TTG GA    AKV+
Sbjct:    4 RAAVAVEAGKPLEIMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGMFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTAIRGTQGQGLMPDGTSRFSMLDGTPILHYMGCSTFSNYTVLPEIAVAKVRPDAPFDKICYIGCGVTTGIGAVINTAKVE 186          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.167e-31
Identity = 82/214 (38.32%), Postives = 107/214 (50.00%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            +A V    G+PL+V E+ +E PK+ EV V++    +CHTD     G  P  L+P +LGHEG GVV   G  V  VK G+ VIP Y  EC++C +C S  TNLC         GLM DGTSR S + G  ++H   CST+S Y V+    V KV          ++ CG TTG GA    AKV+                     R+ GA  I+G
Sbjct:    4 RAAVALEAGKPLEVMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGLFPSILGHEGAGVVVEVGPGVTSVKPGNHVIPLYTPECRQCASCLSGKTNLCTAIRATQGQGLMPDGTSRFSMLDGTPIFHYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIG 217          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            K  + W   +P  VEEI++  P+  EV+++M  A +C +D  L +   P   +P + GHEG G+V   G  V +   GD V+  +I  C +C +C + M NLC L   +     + DG+ R+  RGQ +Y +    T+S YMV+  + VVK+DPS+    A  + CG TTGYG+A + A V
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADV 184          
The following BLAST results are available for this feature:
BLAST of FC868712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
FRMA_HAEIN3.504e-3642.86S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH6_PERMA3.504e-3643.24Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH6_RAT2.271e-3539.89Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH1_GEOAT8.631e-3534.26Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_GEOKN1.127e-3434.26Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU1.127e-3434.26Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_GADCA1.127e-3440.64Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADHI_RHOS43.070e-3242.08Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_PARDE1.167e-3138.32S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHB_MYCTU7.825e-2836.46Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC31003G12EF AbioticL1 Citrus clementina cDNA clone C31003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868712 ID=FC868712; Name=FC868712; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCGAGGCTGCGAAATCCCCAGCAATACTAACAATGAGCAATTC
ACAAGCCATAACGTGCAAAGCTGTGGTATGTTGGGGTTTAGGAGAGCCAT
TAAAGGTAGAGGAGATACAAGTAGAGCCTCCGAAATCAACTGAAGTTAGG
GTTAAGATGCTTTATGCCAGTGTTTGTCACACTGATATCCTTTGCTCTGA
AGGATTCCCAGCGCCTCTTTATCCTCGTGTTCTCGGGCACGAAGGTGTCG
GGGTGGTGGAGAGTGCTGGGGATGAAGTGAAAGAAGTGAAAGAAGGAGAT
ATTGTGATTCCAACTTATATTGGAGAATGTAAAGAATGTGAAAATTGCAC
ATCAGAAATGACCAATTTATGCCTAAAATATCCAATAGCACTGAACGGTT
TAATGCTTGATGGCACTTCAAGAATGTCCGTAAGAGGCCAAAAATTGTAT
CACATTTTTTCATGCTCCACTTGGTCTGAATATATGGTCATCGATGCCAA
TTATGTAGTCAAAGTTGATCCAAGCATTGATCCCTCGGATGCTAGCTTCC
TTTCATGTGGATTTACAACTGGTTATGGGGCGGCTTGGAAGGAAGCCAAA
GTTGACAAAGGATCTAGTGTTGCTGTTTTAGGGCTTGGTACTGTTGGATT
AGGGGCTGTTGATGGAGCCAGGATGCACGGGGCAGCTAAGATATTGGGAT
AGACAAGAACCATG
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