FC868712

Overview
NameFC868712
Unique NameFC868712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.593e-39
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-----PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +  + I CKA + W  G+PL +EE++V PPK+ EVRV+++ ASVC +D  + +  F   L P +LGHE  G+VES G  V   K GD VIP Y+  C++C+ C S +TN C K+     PI    LM D TSR + +G+ +YH    S +S+Y V+    + K+D   +      + CGF+TGYGAA  +AKV
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKV 195          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 84/221 (38.01%), Postives = 122/221 (55.20%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTD--ILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            +  Q I CKA + W  G P  +EE++V PPK+ EVR+K++   +C T+  +L S+     LYP +LGHEG G+VES G+ V  VK GD VI  ++ +C EC +C +   N C+++  +   LM DGTSR + +G+ +YH  + ST+ EY VI    V K+D          +SCGF+TG+GAA   AKV                      +  GAA+I+G
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDL-LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIG 222          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 74/187 (39.57%), Postives = 114/187 (60.96%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN--GLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            + I CKA V W   +P  +EE++V PPK+ EVR+K++   +C +D     G  A  +P +LGHE  GV+ES G++V  +K GD VIP ++ +C EC +C S   NLC+K  ++ +  GLM DGT+R + +G+ ++H    ST++EY V+      K+D +        + CGF+TGYGA  + AKV+
Sbjct:    6 KVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 192          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 78/185 (42.16%), Postives = 111/185 (60.00%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP  + +C +C  C +  +N CLK  ++   G + DGTSR + RG+ ++H    ST+S+Y V+D N V K+D +   +    + CGF+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 87/183 (47.54%), Postives = 105/183 (57.38%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDK 609
            +A V +G G PL++ EI V PPK  EV VK+ +  VCHTD     G  P  L+P VLGHEG GVV   G+ V  VK GD VIP Y  EC EC+ CTS  TNLC+        G+M D TSR  V GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV +
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVMPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQE 186          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 80/192 (41.67%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +  + I CKA + W  G PL +EEI+V PPK+ EVR++++   VC TDI  ++     L+P VLGHE  G+VES G  V   K GD VIP +  +CK C+ C S +TNLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD   +      + CGF++GYGAA   AKV
Sbjct:    3 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKV 194          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 75/187 (40.11%), Postives = 114/187 (60.96%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN--GLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            + I CKA V W   +P  +EE++V PPK+ EVR+K++   +C +D     G  A  +P +LGHE  GVVES G++V  +K GD VIP ++ +C EC +C S   NLC+K  ++ +  GLM DGT+R + +G+ ++H    ST++EY V+      K+D +        + CGF+TGYGA  + AKV+
Sbjct:    5 KVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPVILGHEAAGVVESVGEKVTLLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 191          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 85/181 (46.96%), Postives = 104/181 (57.46%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM DGT+R S  GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKV 184          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 85/181 (46.96%), Postives = 104/181 (57.46%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM DGT+R S  GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKV 184          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 85/181 (46.96%), Postives = 104/181 (57.46%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM DGT+R S  GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKV 184          
The following BLAST results are available for this feature:
BLAST of FC868712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ADHQ_RABIT2.593e-3941.45Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH6_HUMAN5.776e-3938.01Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_CHICK5.776e-3939.57Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1A_PONAB5.776e-3942.16Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
FRMA_PASPI7.544e-3947.54S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH4_MOUSE7.544e-3941.67Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_COTJA7.544e-3940.11Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
FRMA_SHISS1.681e-3846.96S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT1.681e-3846.96S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM1.681e-3846.96S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC31003G12EF AbioticL1 Citrus clementina cDNA clone C31003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868712 ID=FC868712; Name=FC868712; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCGAGGCTGCGAAATCCCCAGCAATACTAACAATGAGCAATTC
ACAAGCCATAACGTGCAAAGCTGTGGTATGTTGGGGTTTAGGAGAGCCAT
TAAAGGTAGAGGAGATACAAGTAGAGCCTCCGAAATCAACTGAAGTTAGG
GTTAAGATGCTTTATGCCAGTGTTTGTCACACTGATATCCTTTGCTCTGA
AGGATTCCCAGCGCCTCTTTATCCTCGTGTTCTCGGGCACGAAGGTGTCG
GGGTGGTGGAGAGTGCTGGGGATGAAGTGAAAGAAGTGAAAGAAGGAGAT
ATTGTGATTCCAACTTATATTGGAGAATGTAAAGAATGTGAAAATTGCAC
ATCAGAAATGACCAATTTATGCCTAAAATATCCAATAGCACTGAACGGTT
TAATGCTTGATGGCACTTCAAGAATGTCCGTAAGAGGCCAAAAATTGTAT
CACATTTTTTCATGCTCCACTTGGTCTGAATATATGGTCATCGATGCCAA
TTATGTAGTCAAAGTTGATCCAAGCATTGATCCCTCGGATGCTAGCTTCC
TTTCATGTGGATTTACAACTGGTTATGGGGCGGCTTGGAAGGAAGCCAAA
GTTGACAAAGGATCTAGTGTTGCTGTTTTAGGGCTTGGTACTGTTGGATT
AGGGGCTGTTGATGGAGCCAGGATGCACGGGGCAGCTAAGATATTGGGAT
AGACAAGAACCATG
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