FC868712

Overview
NameFC868712
Unique NameFC868712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 81/192 (42.19%), Postives = 111/192 (57.81%), Query Frame = 1
Query:   43 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +  + ITCKA + W    PL +EEI+V PPK+ EVR+K++   VC TDI  +      L+P VLGHE  G+VES G  V   K GD VIP +  +CK+C+ C S +TNLC      KYP     LM D TSR + + + +YH    S++S+Y V+    + +VD   +      + CGFT+GYGAA   AKV
Sbjct:    3 TQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKV 194          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.890e-38
Identity = 82/218 (37.61%), Postives = 122/218 (55.96%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPL-YPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA VCWG  +PL +EEI+V PPK  EVRVK++   +C +D     G  + + +P +LGHE  GVVES G+ V + K GD VIP ++ +C EC  C +  +NLC K  I   +G++LD TSR + +G+ +++  S ST++EY V+D   V K+           + CGF+TGYG+A    KV                      ++ GA++I+G
Sbjct:    5 KVIKCKAAVCWGPKQPLSIEEIEVAPPKRHEVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKVIPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLLDKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPGSTCAVFGLGGVGLSVIIGCKVAGASRIIG 222          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.890e-38
Identity = 82/186 (44.09%), Postives = 114/186 (61.29%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W   +P  +E+I+V PPK+ EVR+KM+   VC +D  + S    +PL P VLGHEG G+VES G+ V  VK GD VIP +  +C +C  C     NLC+K  +    G +LDGTSR + RG+ +++  S ST+S+Y V+D   V K+D +        + CGF+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMKNDLMQPRGTLLDGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.386e-38
Identity = 84/178 (47.19%), Postives = 102/178 (57.30%), Query Frame = 1
Query:   58 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA 585
            I CKA V W    PL +E +QV PP+  EVR+K++ + VCHTD     G  P  L+P +LGHEG G+VES G +V  V+ GD VI  Y  ECK C+ C S  TNLC +       GLM DGTSR S  G  L H   CST+SEY V+    VV ++          L CG TTGYGAA
Sbjct:   11 INCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAA 188          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.386e-38
Identity = 77/185 (41.62%), Postives = 110/185 (59.46%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C +D     G  A   P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C    +N CL   +    G++LDGTSR + +G+ ++H    ST+S+Y V+D   V K+D +        + CGF+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPLPVILGHEAAGIVESIGEGVTTVKPGDKVIPLFTPQCGKCRICKHPESNFCLINDLGKPKGMLLDGTSRFTCKGKPIHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.386e-38
Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVD 606
            + I CKA V W   +P  +EE++V PPK+ EVR+K+L   +C +D     G     +P +LGHE  GVVES G+ V  VK GD VIP ++ +C EC  C S   NLC K  I + +GLM DGT+R + +G+ ++H    ST++EY V+    V K+  +        + CGF+TGYGAA + AKV+
Sbjct:    6 KVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRPFPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSACLSTKGNLCSKNDIGSASGLMPDGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVE 191          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.089e-37
Identity = 78/185 (42.16%), Postives = 109/185 (58.92%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP  I +C +C  C +  +N CLK  ++   G + DGTSR + R + ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 84/181 (46.41%), Postives = 103/181 (56.91%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y   C ECE C S  TNLC+        GLM DGT+R S  GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKV 184          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 77/185 (41.62%), Postives = 109/185 (58.92%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+ A +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C +  +N CLK  +    G + DGT R +  G+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 76/185 (41.08%), Postives = 110/185 (59.46%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W + +P  +E+++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  V+ GD VIP  + +C +C  C +   N CLK  ++   G + DGTSR + RG+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVEPGDKVIPLALPQCGKCRICKTPERNYCLKNDVSNPRGTLQDGTSRFTCRGKPIHHFLGVSTFSQYTVVDENAVAKIDAASPMEKVCLIGCGFSTGYGSAVKVAKV 190          
The following BLAST results are available for this feature:
BLAST of FC868712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ADH4_RAT2.195e-3842.19Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1_RANPE4.890e-3837.61Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH1_PERMA4.890e-3844.09Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
FADH2_SCHPO6.386e-3847.19Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1_RABIT6.386e-3841.62Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1_APTAU6.386e-3841.94Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1A_HUMAN1.089e-3742.16Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
FRMA_ECOL61.423e-3746.41S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1G_HUMAN1.423e-3741.62Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1A_MACMU1.423e-3741.08Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]

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Properties
Property NameValue
Genbank descriptionC31003G12EF AbioticL1 Citrus clementina cDNA clone C31003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868712 ID=FC868712; Name=FC868712; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCGAGGCTGCGAAATCCCCAGCAATACTAACAATGAGCAATTC
ACAAGCCATAACGTGCAAAGCTGTGGTATGTTGGGGTTTAGGAGAGCCAT
TAAAGGTAGAGGAGATACAAGTAGAGCCTCCGAAATCAACTGAAGTTAGG
GTTAAGATGCTTTATGCCAGTGTTTGTCACACTGATATCCTTTGCTCTGA
AGGATTCCCAGCGCCTCTTTATCCTCGTGTTCTCGGGCACGAAGGTGTCG
GGGTGGTGGAGAGTGCTGGGGATGAAGTGAAAGAAGTGAAAGAAGGAGAT
ATTGTGATTCCAACTTATATTGGAGAATGTAAAGAATGTGAAAATTGCAC
ATCAGAAATGACCAATTTATGCCTAAAATATCCAATAGCACTGAACGGTT
TAATGCTTGATGGCACTTCAAGAATGTCCGTAAGAGGCCAAAAATTGTAT
CACATTTTTTCATGCTCCACTTGGTCTGAATATATGGTCATCGATGCCAA
TTATGTAGTCAAAGTTGATCCAAGCATTGATCCCTCGGATGCTAGCTTCC
TTTCATGTGGATTTACAACTGGTTATGGGGCGGCTTGGAAGGAAGCCAAA
GTTGACAAAGGATCTAGTGTTGCTGTTTTAGGGCTTGGTACTGTTGGATT
AGGGGCTGTTGATGGAGCCAGGATGCACGGGGCAGCTAAGATATTGGGAT
AGACAAGAACCATG
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