FC868712

Overview
NameFC868712
Unique NameFC868712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.427e-37
Identity = 81/217 (37.33%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA V W   +P  + EI+V PPK+ EVR+K+L + +C +D     G     +P +LGHE  GVVES G+ V  +K GD VIP ++ +C EC +C     N+C K  +    GL+ DGTSR + +G+ +YH     T++EY V   + VVK+D S        + CGF+TGYGAA   AKV                      +  GA++I+G
Sbjct:    5 KVIKCKAAVVWEPKKPFSIVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVNFPIILGHEAAGVVESVGEGVTSMKPGDKVIPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.427e-37
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W + +P  +E+++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C +  +N CLK  +    G + DGT R + RG+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 86/217 (39.63%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKIL 696
            + I CKA V W   +P  +E+I+V PPK+ EVR+KM+   VC +D     G      P VLGHEG G+VES G+ V  VK GD VIP +  +C +C  C    +NLC   K      G +LDGTSR S RG+ ++H  S ST+S+Y V+D   V K+D +        + CGF+TGYG+A + AKV                      +  GAAKI+
Sbjct:    6 KVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPLPAVLGHEGAGIVESIGEGVTCVKPGDKVIPLFSPQCGKCRICKHPESNLCCQTKNLTQPKGALLDGTSRFSCRGKPIHHFISTSTFSQYTVVDDIAVAKIDAAAPLDKVCLIGCGFSTGYGSAVQVAKVTPGSTCAVFGLGGVGLSVVIGCKTAGAAKII 222          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 80/217 (36.87%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            + I CKA V W   +P  +EE++V PPK+ EVR+KM+   +C +D     G      P + GHE  G+VES G+ V  V+ GD VIP +  +C +C  C     N CLK  +++  G M DGTSR + RG+ ++H    ST+S+Y V+D   V K+D +        + CGF+TGYG+A K AKV +                    +  GAA+I+G
Sbjct:    6 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIG 222          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W + +P  +E+++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C +  +N CLK  +    G + DGT R + RG+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W + +P  +E+++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C S   N C+K  ++   G + DGT R + RG+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKSPEGNYCVKNDLSNPRGTLQDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 82/181 (45.30%), Postives = 104/181 (57.46%), Query Frame = 1
Query:   67 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            +A V + +G+PL++ EI V PP+  EV VK+ +  VCHTD     G  P  L+P VLGHEG G+V   G+ V  V+ GD VIP Y  EC +C  C S  TNLC+        G+M DGTSR S  GQ LYH   CST+SEY V+    + K++P  +      L CG TTG GA    AKV
Sbjct:    4 RAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVMPDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKV 184          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 86/215 (40.00%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   58 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVDKXXXXXXXXXXXXXXXXXXXXRMHGAAKILG 699
            ITCKA V W   +PL +E I V PPK+ EVR+K+L + +C +D    +      +P +LGHE VGVVES G  V  VK GD VIP ++ +C  C  C S  +N C K  + A  GLM D TSR + RG+ +Y++   ST++EY V+    V K+DP   P ++  + CGF TGYGAA   AKV                      +  GA++I+G
Sbjct:    8 ITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLVGTSTFTEYTVVADIAVAKIDPKA-PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIG 221          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.061e-37
Identity = 78/185 (42.16%), Postives = 111/185 (60.00%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W L +P  +E+I+V PPK+ EVR+KM+   VC +D     G      P VLGHEG G+VES G+ V  VK GD VIP +  +C EC  C    +N C +  + +  G + +GTSR S +G+++++  S ST+S+Y V+D   V K+D +        + CGF+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPLPAVLGHEGAGIVESVGEGVTCVKPGDKVIPLFSPQCGECRICKHPESNFCSRSDLLMPRGTLREGTSRFSCKGKQIHNFISTSTFSQYTVVDDIAVAKIDGASPLDKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC868712 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 74/185 (40.00%), Postives = 106/185 (57.30%), Query Frame = 1
Query:   52 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV 603
            + I CKA V W + +P  +EE++V PPK+ EVR+KM+   +C +D     G      P +LGHE  G+VE  G+ V  VK GD VIP +  +C +C  C +  +N C K  ++   G M DGT R +  G+ ++H    ST+S+Y V+D N V K+D +        + CGF+TGYG A K AKV
Sbjct:    6 KVIKCKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPLPAILGHEAAGIVEGVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCFKNDLSNPRGTMQDGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKV 190          
The following BLAST results are available for this feature:
BLAST of FC868712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ADH1B_UROHA2.427e-3737.33Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1B_PANTR2.427e-3740.54Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1_RAT4.139e-3739.63Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1E_HORSE4.139e-3736.87Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1B_HUMAN4.139e-3740.54Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1B_PAPHA5.406e-3740.54Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
FRMA_SYNY37.061e-3745.30S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
ADH8_RANPE7.061e-3740.00NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH1_MOUSE7.061e-3742.16Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1G_PAPHA2.054e-3640.00Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionC31003G12EF AbioticL1 Citrus clementina cDNA clone C31003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868712 ID=FC868712; Name=FC868712; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCGAGGCTGCGAAATCCCCAGCAATACTAACAATGAGCAATTC
ACAAGCCATAACGTGCAAAGCTGTGGTATGTTGGGGTTTAGGAGAGCCAT
TAAAGGTAGAGGAGATACAAGTAGAGCCTCCGAAATCAACTGAAGTTAGG
GTTAAGATGCTTTATGCCAGTGTTTGTCACACTGATATCCTTTGCTCTGA
AGGATTCCCAGCGCCTCTTTATCCTCGTGTTCTCGGGCACGAAGGTGTCG
GGGTGGTGGAGAGTGCTGGGGATGAAGTGAAAGAAGTGAAAGAAGGAGAT
ATTGTGATTCCAACTTATATTGGAGAATGTAAAGAATGTGAAAATTGCAC
ATCAGAAATGACCAATTTATGCCTAAAATATCCAATAGCACTGAACGGTT
TAATGCTTGATGGCACTTCAAGAATGTCCGTAAGAGGCCAAAAATTGTAT
CACATTTTTTCATGCTCCACTTGGTCTGAATATATGGTCATCGATGCCAA
TTATGTAGTCAAAGTTGATCCAAGCATTGATCCCTCGGATGCTAGCTTCC
TTTCATGTGGATTTACAACTGGTTATGGGGCGGCTTGGAAGGAAGCCAAA
GTTGACAAAGGATCTAGTGTTGCTGTTTTAGGGCTTGGTACTGTTGGATT
AGGGGCTGTTGATGGAGCCAGGATGCACGGGGCAGCTAAGATATTGGGAT
AGACAAGAACCATG
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