FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 69/173 (39.88%), Postives = 100/173 (57.80%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKL--------RDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDA 530
            D + LQD C  D T K  + +NGLPCK P  + A DF  + +        R A  + ++ +++ ++    D PGLNTLG S AR D+   G+  PH HPRASE   V  G V  GFV +  + +V   +L+ G+V   P+GL+HF  N G E A +++ L+SQNPG+V ++DA
Sbjct:   30 DPNPLQDFCVADPTSK--VRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGATASRRYGFTARSV----DIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADA 196          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 66/189 (34.92%), Postives = 99/189 (52.38%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRK 572
            ++  T +    A  + LQD+C  D +    + +NG  CK   +I   DF    L +   T+    S +T       PGLNTLGLS++R D   +G+  PH HPRASE++FV +G +  GFV T  ++    L  G+V  FP+GL+HF  N+    A+V +  +SQ PG  S+  + F      DD++ K
Sbjct:    9 VVVVTMLFVAMASAEMLQDVCVADLSN--AVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGALP--DDILAK 193          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.951e-25
Identity = 68/178 (38.20%), Postives = 98/178 (55.06%), Query Frame = 3
Query:    9 ICFTCIGFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            I FT      +   ++QD C  D   K      G  CK P ++  +DF  + L  AG+T     +++T   AA FPG+N LG+S+AR DL   G++  HTHP ASE+L V +G +IAGFV ++   +   LK G++ VFP+GLLHF  N G   A  F   +S +PG+  +  A F +
Sbjct:    5 IFFTFFLLLSSSHASVQDFCVADY--KAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKN 180          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.549e-24
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   30 FRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            F    F ++QD C  D    Q    +G  CK+PD++  +DF  + L  AG+T     +++T   A  F GLN L +S+AR DL   G++  HTHP ASE+L V +G + AGF+ +  +V+   L  G+  VFP+GLLHF  N G   A  F    S +PG+  +  A F++
Sbjct:   14 FSSISFASVQDFCVADPKGPQNP--SGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAN 182          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 65/165 (39.39%), Postives = 92/165 (55.76%), Query Frame = 3
Query:   48 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            D++QD C  +  + +T    G PC  P  + ASDF  + L   G+T     +++T    A FP LN LG+S AR DL   G++  HTHP ASE+LFV  G + AGF+ +   V+   LK G+V VFP+GLLHF  N G   A      +S +PG+  +  A F++
Sbjct:   17 DSVQDFCVANLKRAETPA--GYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFAN 178          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.022e-24
Identity = 71/199 (35.68%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALDE*SIRNVTLPK 629
            AD + LQD C  D +    + +NG PCK P ++   DF    L  A  T      S++T       PGLNTLG+S++R D    G+  PH HPRASE +FV +G +  GF+ T  ++    +  G+V VFP+ LLHF  N     A+V +  +SQ PG   +  + F     I DDL+ K    +A +   I+    PK
Sbjct:   22 ADTNMLQDFCVADLSNG--LKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIKGKFPPK 218          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   57 QDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV-DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            QD C  D T   T    G PCK+   + A DF    L  AG+T     +++T      FPG+N LG+S AR D+ V G+V  HTHP ASE+LFV +G V AGF+  ++  V+   L AG++ VFP+GLLH+ +N G   A      +  NPG+     A F++
Sbjct:   26 QDFCVADLTCSDTPA--GYPCKAS--VGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFAN 184          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            +QD C  D    +     G  CK P  +  +DF  + L  AG+T     +++T    A FPG+N LG+S+AR DL V G+V  HTHP ASE+L V +G + AGFV ++   +   L+ G++ VFP+GLLHF  N G   A  F+   S +PG+  +  A F +
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKN 185          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSI 521
            LQD C  D   K  + +NG  CK           S+KL  AG+T     S++T L  A++PG NTLG+S+ R D    G   PH HPRA+E+  V KG   V I G +D+  +++  +++AGE  + PRGL+HF FNVG   A++    NSQ+P VV +
Sbjct:   29 LQDFCVADLDGK-AVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFV 186          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.497e-23
Identity = 68/190 (35.79%), Postives = 95/190 (50.00%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDIC---PTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            ++  TC     AD + +QD C   P    +    +  G PCK    + + DF    L  AG TD    +SL       FP LNTLG+++ R DL   G+   H+HPRA+E++ V  G ++ GFV T  + +  ++  GE    PRGL+HF +N G   A   +V NSQ PGVV  + A F     I D V
Sbjct:   28 VLASTCA----ADPEPIQDFCVAVPRAGGEASPAY-PGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAV 212          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL51_ORYSJ5.322e-2539.88Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL25_ARATH6.951e-2534.92Probable germin-like protein subfamily 2 member 5 ... [more]
AB19A_PRUPE6.951e-2538.20Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GLP1_SINAL1.549e-2437.43Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_BRANA2.022e-2439.39Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL23_ARATH2.022e-2435.68Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL814_ORYSJ2.641e-2439.88Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
ABP20_PRUPE3.450e-2438.65Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GER3_WHEAT2.920e-2340.25Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL37_ORYSJ8.497e-2335.79Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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