FC868743

Overview
NameFC868743
Unique NameFC868743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_LEGPL (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Lens) GN=hmgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 87/202 (43.07%), Postives = 111/202 (54.95%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKP-RVPAHGKLVSEFDKSNSYTTPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y  GFGN   SEA+ GALP   NSP  C  GLYAEQ+SGTSFT PR  N RSWLYRI P+ T   + P        LV E        +P  +RW P+ +      DF++GL+ I G   S L + Y    Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G
Sbjct:    2 YLQGFGNYHHSEAVKGALPPNQNSPQHCSLGLYAEQLSGTSFTRPRHNNLRSWLYRILPTVTQGTYYPYEFNIMQPLVDEL-------SPNAMRWSPLYNSSQIKCDFVEGLFHIAG---SPLVNAYT---YYCNHSMSDKYFANNDGELLFVPYTGEIHLHTEFGKLMLSSGSIAVIPRGVKFKVEVISKEAKGYLCENSG 190          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_LEGPA (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Paris) GN=hmgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 85/204 (41.67%), Postives = 112/204 (54.90%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYT---TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y  GFGN   SEA+ GALP   NSP  C  GLYAEQ+SGTSFT PR  N RSWLYRI P+ T   + P          EF+    +    +P  +RW P+ +      DF++GL+ I  AGS  +      + Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G
Sbjct:    2 YLQGFGNYHHSEAVKGALPTNQNSPQHCSLGLYAEQLSGTSFTRPRHNNLRSWLYRILPTVTQGTYYP---------YEFNVMQPFVDELSPNAMRWSPLYNSSQIKCDFVEGLFHI--AGSPLVN----TYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLHTEFGKLILSSGSIAVIPRGVKFKVEVISKEAKGYLCENSG 190          
BLAST of FC868743 vs. ExPASy Swiss-Prot
Match: HGD_LEGPH (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hmgA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 84/204 (41.18%), Postives = 112/204 (54.90%), Query Frame = 2
Query:  104 YESGFGNSFSSEAIDGALPRG*NSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYT---TPTQLRWKPV-DIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTTNKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFG 703
            Y  GFGN   SEA+ GALP   NSP  C  GLYAEQ+SGT+FT PR  N RSWLYRI P+ T   + P          EF+    +    +P  +RW P+ +      DF++GL+ I  AGS  +      + Y  N SM +  F N DG+ L VP  G + + TE GKL +S G IAV+P+G +F V +    ++GY+ E  G
Sbjct:    2 YLQGFGNYHHSEAVKGALPPNQNSPQHCSLGLYAEQLSGTAFTRPRHNNLRSWLYRILPTVTQGTYYP---------YEFNIMQPFVDELSPNAMRWSPLYNSSQIKCDFVEGLFHI--AGSPLVN----TYTYYCNHSMSDKYFANNDGELLFVPYAGEIHLHTEFGKLMLSSGSIAVIPRGVKFKVEVISKEAKGYLCENSG 190          
The following BLAST results are available for this feature:
BLAST of FC868743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_LEGPL3.714e-3343.07Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPA3.714e-3341.67Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPH1.081e-3241.18Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]

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Properties
Property NameValue
Genbank descriptionC31004C05EF AbioticL1 Citrus clementina cDNA clone C31004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868743 ID=FC868743; Name=FC868743; organism=Citrus clementina; type=EST; length=724bp
AGGATTGTTAGTGATCTGCTGAGACCAAATGGAGAAGAAGAGTCAACATC
AATCATCATCATTAATCAGAAAATCGCACGGCGAAGATTTCTCTGATCTG
AATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGACGG
TGCGTTGCCACGTGGATAGAACAGCCCCCTCGTTTGTCCGTTCGGTCTCT
ACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCAAT
CAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCGTT
TAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAAGT
CTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATATC
CCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGGGC
TGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTACCA
ACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTTTG
GTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAACT
GGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTTTG
CTGTAAGTTTACCAGATGGTCCATCACGTGGTTACATCGCAGAGATTTTT
GGTACCCATTTCAGCTTCCTGATC
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