FC868765

Overview
NameFC868765
Unique NameFC868765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_RABIT (Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=EIF2C2 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  496 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 697          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_MOUSE (Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  516 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_HUMAN (Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  515 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 716          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_BOVIN (Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  516 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLWLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_XENTR (Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 80/207 (38.65%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + + M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  527 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLSAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 728          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_XENLA (Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 80/207 (38.65%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + + M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  518 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLSAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 719          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 95/260 (36.54%), Postives = 130/260 (50.00%), Query Frame = 3
Query:    9 PVLSEPASMRLFSNVGGLQELLEDVTSRAYKIGKGHLQILICVMSRKDDGYKY--LKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            PVL  P S R       L+    D TS   K+ +G    L+ V+   ++G  Y  LK I ET++G+V+QCCL+ +  K     QY            GG N  L+D    R+P       ++F GADV HP     +SPSIAAVVA+ +WP   +Y   V  Q HR E I +               GM  E++ ++ +    +P  II +RDGVSEGQF  VL  EL  ++ A  S++  Y P +T +V QKRH TRLF
Sbjct:  641 PVLP-PVSARPEQVEKVLKTRYHDATS---KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMS--KQYMANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIF-GADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLF 893          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO2_RAT (Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 80/207 (38.65%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID--RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ+++ ++  K   Y  +K + +T +G+ TQC    N  +   Q               GG N  L+   R P F  +  V+F+GADV HP A +   PSIAAVV +++    NRY A VR Q HR E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL+ EL+ ++ A   +  +Y P IT IV QKRH TRLF
Sbjct:  516 LQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQT--LSNLCLKINVKLGGVNNILLPQGRPPVF--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKEYQPGITFIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 86/243 (35.39%), Postives = 126/243 (51.85%), Query Frame = 3
Query:   60 LQELLEDVTSRAYKIGKG-HLQILICVMSRKDDG-YKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            +++ L+ V   +    KG  L++L+ ++   +   Y  LK I ET++G+++QCCL+ +  K     QY            GG N  L+D    R+P       ++F GADV HP    ++SPSIAAVVA+ +WP   +Y   V  Q HR E I +               GM  +++ S+ +    +P  II +RDGVSEGQF  VL  EL  ++ A  S++  Y P +T IV QKRH TRLF
Sbjct:  603 VEKALKHVYHTSMNKTKGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKIS--KQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIF-GADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLF 842          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 88/257 (34.24%), Postives = 129/257 (50.19%), Query Frame = 3
Query:   18 SEPASMRLFSNVGGLQELLEDVTSRAYKIGKG-HLQILICVMSRKDDG-YKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            SEP      +    +++ L+ V + +    KG  L++L+ ++   +   Y  +K I ET +G+++QCCL+ +  K     QY            GG N  L+D    R+P       ++F GADV HP     +SPSIAAVVA+ +WP   +Y   V  Q HR E I +               GM  E++ S+ +    +P  II +RDGVSEGQF  VL  EL  ++ A  S++  Y P +T +V QKRH TRLF
Sbjct:  584 SEPVIPIYSARPDQVEKALKHVYNMSLNKLKGKELELLLAILPDNNGSLYGDIKRICETDLGLISQCCLTKHVFKIS--KQYLANVSLKINVKMGGRNTVLLDAISWRIPLVSDIPTIIF-GADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 837          
The following BLAST results are available for this feature:
BLAST of FC868765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AGO2_RABIT1.640e-2839.13Protein argonaute-2 (Fragment) OS=Oryctolagus cuni... [more]
AGO2_MOUSE1.640e-2839.13Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1... [more]
AGO2_HUMAN1.640e-2839.13Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1... [more]
AGO2_BOVIN1.640e-2839.13Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 S... [more]
AGO2_XENTR3.654e-2838.65Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c... [more]
AGO2_XENLA3.654e-2838.65Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE... [more]
AGO1_ARATH3.654e-2836.54Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO2_RAT4.772e-2838.65Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2... [more]
PINH_ARATH1.389e-2735.39Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
PNH1_ORYSJ1.813e-2734.24Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC31004E05EF AbioticL1 Citrus clementina cDNA clone C31004E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868765 ID=FC868765; Name=FC868765; organism=Citrus clementina; type=EST; length=732bp
TGCAGTGGCCTGTCTTATCTGAACCTGCTTCAATGCGTCTGTTCTCTAAT
GTTGGAGGGCTTCAGGAACTCCTTGAAGATGTTACTTCAAGGGCTTACAA
AATTGGCAAAGGTCATCTGCAGATTCTTATTTGTGTAATGTCTCGGAAGG
ATGACGGTTACAAGTATCTCAAGTGGATTTCTGAGACTAAAGTTGGTGTG
GTGACTCAGTGTTGTTTGTCCACGAATGCCAACAAAGGTAAAGGTCAAGA
TCAATATCTTGCCAATCTTGCACTCAAGATCAATGCGAAGCTTGGAGGCA
GCAACGCAGAGCTCATTGACAGGCTGCCTTACTTCAAGGGTGAAGACCAT
GTTATGTTTGTGGGTGCAGATGTTAATCATCCTGGTGCGAGTAACAAAAC
TAGTCCATCTATAGCAGCTGTTGTTGCCACTGTAAATTGGCCTGCTGCAA
ACAGATATGTGGCAAGGGTGCGCCCCCAAGATCATAGGACAGAGAAAATT
CTGAATTTTGCTGGCATGTGCTTGGAGGTTGTTAAATCTTATGTTCAGTT
GAATAAAGTCAGGCCACAAGAGATTATAGTGTTTCGAGATGGAGTAAGCG
AGGGCCAGTTCGATATGGTTCTCAATGAAGAGTTGGTACCACTAAAGATG
GCATTCAGATCAATGGATTACCACCCAAGAATCACACTTATTGTGGCCCA
GAAGCGACATCAAACTCGTCTATTTCCAAGGG
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