FC868765

Overview
NameFC868765
Unique NameFC868765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 80/208 (38.46%), Postives = 105/208 (50.48%), Query Frame = 3
Query:  159 YKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            Y  LK I E  +G+V+QCC +    K     Q             GG N  L+D    R+P       ++F GADV HP     +SPSIAAVVA+ +WP   +Y   V  Q HR E I +               GM  E++ S+ +    +PQ II +RDGVSEGQF  VL  EL  ++ A  S++  Y P++T IV QKRH TRLF
Sbjct:  682 YGDLKRICEIDLGLVSQCCCTKQVFKMN--KQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIF-GADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLF 886          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 3
Query:  117 LQILICVMSRKDDG-YKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELID----RLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF-------------AGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLF 725
            L +LI ++   +   Y  LK + E  +G+V+QCC +    K     Q             GG N  L+D    R+P       ++F GADV HP     +SPSIAAVVA+ +WP   +Y   V  Q HR E I +               GM  E++ S+ +    +PQ II +RDGVSEGQF  VL  EL  ++ A  S++  Y P++T IV QKRH TRLF
Sbjct:  636 LDLLIGILPDNNGSLYGDLKRVCEIDLGIVSQCCCTKQVFKMN--KQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIF-GADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLYKIWQDPQRGTVSGGMIRELLISFKRSTGEKPQRIIFYRDGVSEGQFYQVLLYELNAIRKACASLETNYQPKVTFIVVQKRHHTRLF 855          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO3_MOUSE (Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL  EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  516 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQT--LSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO3_HUMAN (Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL  EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  516 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQT--LSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO3_BOVIN (Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 79/205 (38.54%), Postives = 109/205 (53.17%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL  EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  516 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQT--LSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO3_CHICK (Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 79/205 (38.54%), Postives = 108/205 (52.68%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K   +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E I + A M  E++  + +  + +P  II +RDGVSEGQF  VL  EL+ ++ A  S+  DY P IT IV QKRH TRLF
Sbjct:  516 LQLIIVILPGKTPVYAEVKRAGDTLLGMATQCVQVKNVIKTSPQT--LSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO3_DANRE (Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 78/205 (38.05%), Postives = 108/205 (52.68%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    N  K   Q               GG N  L+        +  V+F+GADV HP A +   PSIAAVV +++    +RY A VR Q  R E I + A M  E++  + +    +P  II +RDGVSEGQF  VL  EL+ ++ A  S+  +Y P IT IV QKRH TRLF
Sbjct:  516 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQT--LSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTHYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLF 717          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 81/247 (32.79%), Postives = 124/247 (50.20%), Query Frame = 3
Query:   45 SNVGGLQELLEDVTSRAYKI----GKGHLQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTE-------------KILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLFP 728
            SN   ++  L DV SR  ++    GKG LQ+LI ++      Y  +K + E  +G+V+QCCL  +A+  +   QY               N  L  ++   K +   + +   ++H      ++ SIAAVVA+++WP   +Y   V  Q HR E             K++N  GM  E + ++ +    RP+ II +RDGVSEGQF  VL  E+  ++ A  S++  Y P +T +V QKRH TRLFP
Sbjct:  442 SNPNNIENALRDVHSRTSELLAREGKGGLQLLIVILLEVSGSYGKIKRVCENDLGIVSQCCLPRHAS--RPNKQYL-------------ENVAL--KINVKKSQQSSLVL---MSHTPPGEDSASSIAAVVASMDWPEITKYRGLVSAQSHRQEIIEDLFSVGKDPVKVVN-GGMIREFLIAFRKKTGRRPERIIFYRDGVSEGQFSRVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFP 667          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 81/233 (34.76%), Postives = 113/233 (48.50%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNF--------------------------AGMCLEVVKSYVQLN-KVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSMD--YHPRITLIVAQKRHQTRLFP 728
            LQ+LI ++   +  Y  +K + ET++G+V+QC L           Q+            GG N+ L   L     E+  +  GADV HP +   +S SIAAVVA+++WP   +Y A V  Q  R E I +                            GM  E++ S+   N K +PQ II +RDGVS+GQF  VL  E+  +K A  S+D  Y P +T +V QKRH TRLFP
Sbjct:  675 LQLLIVILPDVNGYYGRIKRVCETELGIVSQC-LKPGRKLLSLDRQFLENVSLKINVKAGGRNSVLQRPLVPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQEIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFYRDGVSDGQFLHVLLYEMDAIKKAIASLDPAYRPLVTFVVVQKRHHTRLFP 906          
BLAST of FC868765 vs. ExPASy Swiss-Prot
Match: AGO1_MOUSE (Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 74/205 (36.10%), Postives = 107/205 (52.20%), Query Frame = 3
Query:  117 LQILICVMSRKDDGYKYLKWISETKVGVVTQCCLSTNANKGKGQDQYXXXXXXXXXXXXGGSNAELIDRLPYFKGEDHVMFVGADVNHPGASNKTSPSIAAVVATVNWPAANRYVARVRPQDHRTEKILNFAGMCLEVVKSYVQLNKVRPQEIIVFRDGVSEGQFDMVLNEELVPLKMAFRSM--DYHPRITLIVAQKRHQTRLF 725
            LQ++I ++  K   Y  +K + +T +G+ TQC    NA K   Q               GG N  L+        +  V+F+GADV HP A +   PSI AVV +++    +RY A VR Q  R E I + + M  E++  + +  + +P  II +RDGV EGQ   +L+ EL+ ++ A   +  DY P IT IV QKRH TRLF
Sbjct:  513 LQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNAVKTSPQT--LSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMD-AHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLF 714          
The following BLAST results are available for this feature:
BLAST of FC868765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AGO1D_ORYSJ9.000e-2738.46Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGO1C_ORYSJ9.000e-2736.77Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGO3_MOUSE3.420e-2638.54Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2... [more]
AGO3_HUMAN3.420e-2638.54Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1... [more]
AGO3_BOVIN3.420e-2638.54Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 S... [more]
AGO3_CHICK9.951e-2638.54Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=... [more]
AGO3_DANRE1.697e-2538.05Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 ... [more]
AGO13_ORYSJ6.450e-2532.79Protein argonaute 13 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ1.437e-2434.76Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]
AGO1_MOUSE5.460e-2436.10Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC31004E05EF AbioticL1 Citrus clementina cDNA clone C31004E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868765 ID=FC868765; Name=FC868765; organism=Citrus clementina; type=EST; length=732bp
TGCAGTGGCCTGTCTTATCTGAACCTGCTTCAATGCGTCTGTTCTCTAAT
GTTGGAGGGCTTCAGGAACTCCTTGAAGATGTTACTTCAAGGGCTTACAA
AATTGGCAAAGGTCATCTGCAGATTCTTATTTGTGTAATGTCTCGGAAGG
ATGACGGTTACAAGTATCTCAAGTGGATTTCTGAGACTAAAGTTGGTGTG
GTGACTCAGTGTTGTTTGTCCACGAATGCCAACAAAGGTAAAGGTCAAGA
TCAATATCTTGCCAATCTTGCACTCAAGATCAATGCGAAGCTTGGAGGCA
GCAACGCAGAGCTCATTGACAGGCTGCCTTACTTCAAGGGTGAAGACCAT
GTTATGTTTGTGGGTGCAGATGTTAATCATCCTGGTGCGAGTAACAAAAC
TAGTCCATCTATAGCAGCTGTTGTTGCCACTGTAAATTGGCCTGCTGCAA
ACAGATATGTGGCAAGGGTGCGCCCCCAAGATCATAGGACAGAGAAAATT
CTGAATTTTGCTGGCATGTGCTTGGAGGTTGTTAAATCTTATGTTCAGTT
GAATAAAGTCAGGCCACAAGAGATTATAGTGTTTCGAGATGGAGTAAGCG
AGGGCCAGTTCGATATGGTTCTCAATGAAGAGTTGGTACCACTAAAGATG
GCATTCAGATCAATGGATTACCACCCAAGAATCACACTTATTGTGGCCCA
GAAGCGACATCAAACTCGTCTATTTCCAAGGG
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