FC868767 | Citrus Genome Database

Overview


Name	FC868767
Unique Name	FC868767
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	704

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 67/146 (45.89%), Postives = 92/146 (63.01%), Query Frame = 3

Query:  159 FGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 593
            F +  Q G VV V V +D VT    GYG+V F + +DA  AI+ LN I LYGKPIRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + K+  D  +G S+G+GF+ Y + E++  AIE +NG  L ++Q+ V
Sbjct:   53 FDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

HSP 2 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 54/178 (30.34%), Postives = 95/178 (53.37%), Query Frame = 3

Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 629
            L++ FG   + G + +  V KD      +G+GFV F + +DA  A++ LN  K   K     R  K S+ +  L V               +NL++ NLDP + ++ L + FS FG  VT+ K+MRDP+ G S+G GF+++ + E +  A+  ++G+ + ++ + V+ A +K+ +  R
Sbjct:  231 LKNAFG---EYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.965e-24
Identity = 59/151 (39.07%), Postives = 92/151 (60.93%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 626
            G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFSAFG I++  K+  D D G S+ FGF+ Y++ EA+ AAIE++NG  L +R++ V  +  KKD + +
Sbjct:   91 GQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILS-VKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESK 239

HSP 2 Score: 31.9574 bits (71), Expect = 1.965e-24
Identity = 16/44 (36.36%), Postives = 22/44 (50.00%), Query Frame = 2

Query:   41 TTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            T+   P   A   G+ S      A+ YVG L+P V E  L+E+F
Sbjct:   44 TSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIF 87

HSP 3 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            G + ++Y+ KD      +G+GFV F   E A  A++ LN  ++ G+ I V +A +                 +K S   G NLF+ NLD  +D + L + F  FG I T+ K+M D D G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD +
Sbjct:  272 GKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTI-TSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVR 432

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.558e-24
Identity = 55/152 (36.18%), Postives = 92/152 (60.53%), Query Frame = 3

Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L +R++ V  +  +K+ + E
Sbjct:   34 AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 28.4906 bits (62), Expect = 2.558e-24
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG+L P VTE +L+E F
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKF 31

HSP 3 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = 3

Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            L+ +FG   Q G  ++V V  D      +G+GFV F   EDA  A+  +N   L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   F+ FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  207 LKEWFG---QYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

HSP 4 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 48/137 (35.04%), Postives = 80/137 (58.39%), Query Frame = 3

Query:  222 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L + F  +G  ++  K+M D D G SRGFGF+S++  E +  A++ MNG+ L  + I V  A KK
Sbjct:  135 NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS-VKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.321e-24
Identity = 55/145 (37.93%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + S ED + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL-SCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 214

HSP 2 Score: 32.7278 bits (73), Expect = 4.321e-24
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   48 ASLYVGELDPSVTEAMLFELF 68

HSP 3 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D + N  +GYGFV + + E A+ AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D DV ++   + F   G I T+  I RD D G SRGFGF++Y   EA+  A++ +N      +++ V  A KK  + E
Sbjct:  160 GNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDI-TSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREE 312

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.622e-24
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++  K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   76 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC-KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218

HSP 2 Score: 35.8094 bits (81), Expect = 5.622e-24
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            SA +   A+ YVG LDP VTE +L+ELF
Sbjct:   45 SASQPHSASLYVGELDPSVTEAMLYELF 72

HSP 3 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 48/156 (30.77%), Postives = 88/156 (56.41%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  164 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.622e-24
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++  K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   76 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC-KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 218

HSP 2 Score: 35.8094 bits (81), Expect = 5.622e-24
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            SA +   A+ YVG LDP VTE +L+ELF
Sbjct:   45 SANQPHSASLYVGELDPSVTEAMLYELF 72

HSP 3 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 48/156 (30.77%), Postives = 88/156 (56.41%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D +V ++     F  FG I T+  + RD + G SRGFGF+++ + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  164 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316

[Close]

BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.519e-24
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   72 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 214

HSP 2 Score: 35.039 bits (79), Expect = 9.519e-24
Identity = 20/46 (43.48%), Postives = 25/46 (54.35%), Query Frame = 2

Query:   41 TTRIAPGVGANLLGQHSAERNQ--DATAYVGNLDPQVTEELLWELF 172
            TT  AP   A      +   +Q   A+ YVG LDP VTE +L+ELF
Sbjct:   23 TTPAAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELF 68

HSP 3 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++ E+     F  FG I T+  + RD + G SRGFGF++Y + +++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  160 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEI-TSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREE 312

[Close]

BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.238e-23
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   73 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 215

HSP 2 Score: 34.6538 bits (78), Expect = 1.238e-23
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            +A +   A+ YVG LDP VTE +L+ELF
Sbjct:   42 NASQPHSASLYVGELDPSVTEAMLYELF 69

HSP 3 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 51/156 (32.69%), Postives = 89/156 (57.05%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+D DV E+   + F  FG I T+  + RD + G SRGFGF+++ + E++ AA++ MN + +  +++ V  A KK  + E
Sbjct:  161 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313

[Close]

BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.238e-23
Identity = 56/153 (36.60%), Postives = 93/153 (60.78%), Query Frame = 3

Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGE 626
            Q G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      GA N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L  +++ V +   KKD + +
Sbjct:   82 QIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 232

HSP 2 Score: 32.7278 bits (73), Expect = 1.238e-23
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   60 ASLYVGELDPSVTEAMLFELF 80

HSP 3 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERILAAN 665
            G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N++ +V ++   + F+ FG  VT+  + RD + G SRGFGF+++ + EA+  A++ +NG+    + + V  A KK  + E  R    A R+  AN
Sbjct:  172 GNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGE-VTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 339

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BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.239e-23
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   78 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 220

HSP 2 Score: 34.6538 bits (78), Expect = 1.239e-23
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            +A +   A+ YVG LDP VTE +L+ELF
Sbjct:   47 AANQPHSASLYVGELDPSVTEAMLYELF 74

HSP 3 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 51/156 (32.69%), Postives = 89/156 (57.05%), Query Frame = 3

Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I NLD ++D+      F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  166 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI-TSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 318

The following BLAST results are available for this feature:

BLAST of FC868767 vs. ExPASy Swiss-Prot

BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126


Match Name	E-value	Identity	Description
PABP2_ARATH	1.768e-24	45.89	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP_LODEL	1.965e-24	39.07	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPB_XENLA	2.558e-24	36.18	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP_PHANO	4.321e-24	37.93	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPFU	5.622e-24	36.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEOFI	5.622e-24	36.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPTN	9.519e-24	36.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPOR	1.238e-23	36.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEUCR	1.238e-23	36.60	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPNC	1.239e-23	36.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

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Properties


Property Name	Value
Genbank description	C31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG