FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  234 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 563
            GYGFV +   +DA+ A+ VLN ++L  K I+V+ A     ++  GANL++  L   + ++ L   F+ FG I+T+  +    +   ++G GFI +D  E +  AI A+NG
Sbjct:  204 GYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIK-GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  360 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 623
            DV    F+G L    D++ L + FS +G ++ + KI+ D +TG SRGFGF+++ S EA   AIEAMNGQ L  R ITV+ A  + + G
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDG 89          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN---------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            +GY FVEF + EDA  A+   N  ++ G+ IR+  +S   +  ++ A          LF+  L  D  E+ L ++F        + +I+ D DTG+S+GFGF+ + S E + AA EAM    +   ++T+ +A  K
Sbjct:  498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.559e-11
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS----------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            +AG V NV +  DRVT+  +G+ FV   S E+A  AI++ +  ++ G+ ++VN     +                  +D    L++ NL   +  + L D F+     ++  K++ D  +G SRGFGFI++ S EA ++A++ MN   L  R + ++ A +K
Sbjct:  136 EAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMS-AKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296          

HSP 2 Score: 20.4014 bits (41), Expect = 5.559e-11
Identity = 10/27 (37.04%), Postives = 14/27 (51.85%), Query Frame = 2
Query:   92 AERNQDATAYVGNLDPQVTEELLWELF 172
            +E  +    YVGNL   +T   L E+F
Sbjct:  108 SESVEGGRLYVGNLPFSMTSSQLSEIF 134          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_HUMAN (RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.440e-11
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 329
            QAGPV+ V +PKD+     Q + FV F+ E    YA+ +LN IKLYG+PI++
Sbjct:   32 QAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLYGRPIKI 82          

HSP 2 Score: 35.039 bits (79), Expect = 9.440e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            +A    D T +VGNL+ +VTEELL+ELF
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELF 30          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.444e-11
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 398
            QAGPV+ V +PKD+     Q + FV F+ E    YA+ +LN IKL+G+PI++  +A     S +V  +     +GN  P
Sbjct:   32 QAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109          

HSP 2 Score: 35.039 bits (79), Expect = 9.444e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELF 172
            +A    D T +VGNL+ +VTEELL+ELF
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELF 30          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ELAV_DROME1.006e-1134.55Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
GRP_HORVU1.716e-1144.32Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
NUCL_CHICK3.823e-1131.62Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
ROC5_NICSY5.559e-1129.0133 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM7_HUMAN9.440e-1148.08RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1... [more]
RBM7_BOVIN9.444e-1137.97RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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