FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.242e-23
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   + GKPIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+ F+ +++ EA+D AIE MNG  L +R++ V  +  +K+ + E
Sbjct:   34 AGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182          

HSP 2 Score: 25.409 bits (54), Expect = 1.242e-23
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG+L   VTE +L+E F
Sbjct:   11 ASLYVGDLHSDVTEAMLYEKF 31          

HSP 3 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 51/137 (37.23%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  222 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            N  +GY FV F ++E AD AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   +VD++ L + FS FG  ++  K+MRDP+ G S+GFGF+SY+  E ++ A+E MNG+ +  + I V  A KK
Sbjct:  135 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269          

HSP 4 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            Q G  ++V V +D      +G+GFV +   EDA+ A++ +N  ++ GK I V +A                  Q++ S   G NL+I NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ + ++ + V+ A +K+ +
Sbjct:  213 QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.548e-23
Identity = 55/153 (35.95%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGE 626
            Q G V ++ V +D +T    GY +V + S  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +N   L  +++ V Y   KKD + +
Sbjct:   87 QIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSK 237          

HSP 2 Score: 32.7278 bits (73), Expect = 3.548e-23
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   65 ASLYVGELDPSVTEAMLFELF 85          

HSP 3 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 52/171 (30.41%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERILAAN 665
            G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+  +  ++   D F+ +G  VT+  + RD + G SRGFGF+++ + E +  A+E +NG+    + + V  A KK  + E  R    A R+  AN
Sbjct:  177 GNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGD-VTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 344          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.550e-23
Identity = 53/145 (36.55%), Postives = 89/145 (61.38%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            G V ++ V +D VT    GY +V + +  D + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++  K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   75 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC-KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 217          

HSP 2 Score: 33.113 bits (74), Expect = 3.550e-23
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   51 ASLYVGELDPSVTEAMLYELF 71          

HSP 3 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 53/156 (33.97%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DPDV E+     F  FG I T+  + RDP+ G SRGFGF++Y + E++ AA++ M+ + +  +++ V  A KK  + E
Sbjct:  163 GNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI-TSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREE 315          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 4.633e-23
Identity = 54/152 (35.53%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + G+P+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L +R++ V  +  +K+ + E
Sbjct:   34 AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182          

HSP 2 Score: 25.409 bits (54), Expect = 4.633e-23
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG+L   VTE +L+E F
Sbjct:   11 ASLYVGDLHQDVTEAMLYEKF 31          

HSP 3 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            L+  FG   + GP ++V V  D      +G+GFV F   EDA  A+  +N   + GK + V +A                  QD+ +   G NL++ NLD  +D++ L   F  FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  207 LKEMFG---KYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374          

HSP 4 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 44/137 (32.12%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  222 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D++++ L + F  +G  ++  K+M D D G S+GFGF+S++  E +  A++ MNG+ +  + + V  A KK
Sbjct:  135 NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS-VKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 57/141 (40.43%), Postives = 91/141 (64.54%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 599
            GPV ++ V +D VT    GY +V F + ED + A+  LN   + G+P R+  + +D     +G  N+FI NLDP +D K L+DTFSAFG I+ + K+  D + GN++G+GF+ +DS E+++AAIE +NG  L ++++ V +
Sbjct:  104 GPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL-SCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242          

HSP 2 Score: 80.8777 bits (198), Expect = 2.034e-15
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            Q G + ++ + KD+  +  +G+GFV + + E A  A+  LN  +  GK + V +A +                 +K +   G NLFI NL  +VD++ L   FSAFG I T+ KIM D + G S+GFGF+ Y + E ++ A+  MN + L  + + V+ A +K+ +
Sbjct:  283 QFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445          

HSP 3 Score: 22.3274 bits (46), Expect = 2.034e-15
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELF 172
            Y+ NLD ++TE+   +LF
Sbjct:  264 YIKNLDTEITEQEFSDLF 281          

HSP 4 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 49/156 (31.41%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV-NKASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V  D + N  +GYGFV F S E A+ AI+ +N + L  K + V +  S+ ++   V A      N++I NLD ++ E+   D F  FG I T+  +++D +    RGFGF++Y + E +  A++ +N +    +++ V  A KK  + E
Sbjct:  192 GKILSCKVAVDELGNA-KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI-TSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.844e-23
Identity = 58/151 (38.41%), Postives = 92/151 (60.93%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 626
            G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   76 GQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 30.0314 bits (66), Expect = 7.844e-23
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELF 172
            G+ S      A+ YVG L+P V E  L+E+F
Sbjct:   42 GESSGVAENSASLYVGELNPSVNEATLFEIF 72          

HSP 3 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 51/164 (31.10%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            G + ++Y+ KD+     +G+GFV F   E A  A++ LN  ++ G+ I V +A + ++ L+                  G NLF+ NLD  +D + L + F  FG I T+ K+M D + G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD +
Sbjct:  257 GKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI-TSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVR 417          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.021e-22
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 626
            G V ++ V +D VT    GY +V F   ED + AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L+DTF+AFG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   75 GQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKIL-SCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK 223          

HSP 2 Score: 28.8758 bits (63), Expect = 1.021e-22
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG L+P V E LL+E+F
Sbjct:   51 ASLYVGELNPSVNEALLFEIF 71          

HSP 3 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  159 FGSCFQA-GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPT 695
            F   F+A G + ++Y+ KD      +G+GFV F + E A  A+  LN  ++ G+ I V +A + ++ L+                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD    R     ++I A N    Q +  T
Sbjct:  248 FKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAAT 438          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.323e-22
Identity = 54/151 (35.76%), Postives = 92/151 (60.93%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L ++++ V  +  KKD + +
Sbjct:   79 GQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227          

HSP 2 Score: 32.7278 bits (73), Expect = 1.323e-22
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG LDP VTE +L+ELF
Sbjct:   55 ASLYVGELDPSVTEAMLFELF 75          

HSP 3 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + + E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D D  E+   D F  FG I T+  + RD ++G SRGFGF+++ S + + AA+EA+N +    +++ V  A KK  + E
Sbjct:  167 GNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI-TSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREE 320          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.328e-22
Identity = 58/151 (38.41%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 626
            G V ++ V +D VT    GY +V F    D   AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L+DTFSAFG I++  K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  K+D + +
Sbjct:   82 GQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSC-KVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESK 230          

HSP 2 Score: 31.9574 bits (71), Expect = 1.328e-22
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 2
Query:   80 GQHSAERNQDATA--YVGNLDPQVTEELLWELF 172
            G+ + E  ++A+A  YVG L+P V E LL+E+F
Sbjct:   46 GEGAGEEGEEASASLYVGELNPSVNEALLFEIF 78          

HSP 3 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            GPV +V++  D+     +G+GFV F + E A  A+K +N  ++ G+ + V +A + ++ LD                  G NLF+ NLD  +D + L + F  FG I T+ ++M D D G S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD +
Sbjct:  263 GPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTI-TSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVR 423          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.330e-22
Identity = 55/139 (39.57%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 593
            G V ++ V +D +T    GY +V F   + A  AI+ LN   + GK  R+  + +D      GA N+FI NL PD+D K LYDTFS FG I+++ K+  D +TG S+GFG++ ++  E++  AI+A+NG  L  ++I V
Sbjct:   59 GAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS-KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          

HSP 2 Score: 28.4906 bits (62), Expect = 1.330e-22
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 2
Query:   95 ERNQDATA----YVGNLDPQVTEELLWELF 172
            E NQ  T     YVG+LDP V+E  L+++F
Sbjct:   26 EENQSETVSASLYVGDLDPSVSEAHLYDIF 55          

HSP 3 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 3
Query:  228 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKS 686
            ++G+GFV F + EDA   ++ LN  +  G+P+ VN+A +                 +K +   G NLFI NLD  +D+K L + F+ +G I T+ K+M   + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N    Q++
Sbjct:  255 NKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTI-TSAKVM-TTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQMRFQQA 419          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PABP4_HUMAN1.242e-2338.16Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_CHAGB3.548e-2335.95Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL3.550e-2336.55Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPA_XENLA4.633e-2335.53Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_SCHPO7.427e-2340.43Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL7.844e-2338.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA1.021e-2239.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM1.323e-2235.76Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU1.328e-2238.41Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA1.330e-2239.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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