FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 55/173 (31.79%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  138 PRLLRSYFGSCFQ-AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 650
            P++  ++    F+    VV+V V +D+      GY ++ F +  DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R
Sbjct:   58 PKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227          

HSP 2 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            ++ F +    G +++  V  D VT   +GYGFV+F  EE A  AI  LN + +  K +       R  +A  +        N+++ NL  ++ E  L  TF  FGVI ++  +MRD  +GNSR FGF++++  EA+ +A+E MNG  L +  + V  A KK  + E
Sbjct:  150 KALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312          

HSP 3 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 55/175 (31.43%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            LR  FG   + G + +  V +D+  N  + +GFV F   E A  A++ +N I L    +   R  K S+ ++ L                GANL++ NLD  VD++ L + FS +G  VT+ K+M +P  G SRGFGF++Y + E +  A+  MNG+ +  + + ++ A +K+ +
Sbjct:  245 LRKTFG---KFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 62/187 (33.16%), Postives = 103/187 (55.08%), Query Frame = 3
Query:   87 TPPREIKMPQLMSAISIPRLLRSY-----FGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGE 626
            TP      PQ  +++ +  L  S      F    Q G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L  +++ V +   KKD + +
Sbjct:   49 TPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 233          

HSP 2 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 60/225 (26.67%), Postives = 97/225 (43.11%), Query Frame = 3
Query:  138 PRLLRSYFGSCFQA-GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT----------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            P +    F + F+  G V +  + +D+ T   +G+GFV F S EDA  A++ LN  + +G+ + V +A                  Q+K S   G NL+I NLD +VD++ L   FS FG I T+ K+MRD  T                                              G S+GFGF+ + + + +  A+  MN + + N+ + V+ A +KD +
Sbjct:  251 PEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPI-TSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR 474          

HSP 3 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 48/156 (30.77%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N++P+V +      F  +G  VT+  + RD +TG SRGFGF+++ S E +  A++ +N +    + + V  A KK  + E
Sbjct:  173 GNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREE 326          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.239e-19
Identity = 53/151 (35.10%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 626
            G V ++ V +D +TN   GY +V F   E    AI+ LN   + GKP R+  + +D      G+ N++I NL P +D K L++TFS FG I+ + K+  D + G SRGFGF+ +++   +  AIEA++G  + ++++ V+ +  KKD + +
Sbjct:   62 GSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL-SCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSK 210          

HSP 2 Score: 28.4906 bits (62), Expect = 1.239e-19
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG L+P V+E LL+++F
Sbjct:   38 ASLYVGELEPTVSEALLYDIF 58          

HSP 3 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 665
            G + +  + KD    L +G+GFV F     A  A+  LN ++  G+ + V +A +  + L                   G NLF+ NLD  +D++ L + F+ FG I T+ K+MRD +TGNSRGFGF+ + + E +  AI   N Q +  + + V+ A +K+    R    A++I A N
Sbjct:  243 GKITSAVLEKDSEGKL-RGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTI-TSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEV---RRNQLAQQIQARN 415          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 599
            GPV ++ V +D VT    GY +V + +  D + A++ LN   + G+  R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++  K+  D + G SRGF F+ Y + EA+DAAI+A+NG  L ++++ V +
Sbjct:   70 GPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC-KVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208          

HSP 2 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            GP ++V + +D    + +G+GFV + + E A  A+  LN  ++ GK +   +A            S ++K L+      G NL++ NLD + D+  L   F AFG I T+ K+MRD D+G SRGFGF+ Y S + +  A+  MNG+ +  + + V+ A +KD +
Sbjct:  251 GPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.728e-19
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 626
            Q G V N+ V +D  T     Y +V + +  DA+ A+  LN   + GK  R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I+ + K++ D D  +S+GFGF+ Y++ E++D AI  +NG  +  +++ V        +G+
Sbjct:   32 QVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNIL-SCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181          

HSP 2 Score: 25.7942 bits (55), Expect = 2.728e-19
Identity = 10/21 (47.62%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            ++ YVG+L P+V+E+ L+E+F
Sbjct:   10 SSLYVGDLLPEVSEQHLFEIF 30          

HSP 3 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDV---GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 620
            Q G + N+ +  D      +G+GF  F S E A   ++  N    +GKPI       ++ + ++ K + +    G NL+I N+D  +D   L + FS FG I T+  +M+D     S+GFGF+ Y + + +  A+  MNG+ +  + + V+ A +KD +
Sbjct:  210 QYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTI-TSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIR 366          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 58/158 (36.71%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTPAE 647
            GPV+++ + +D+VT    GY +V F    DA  A+  +N   + GK IR+  + +D      G  N+FI NLD  +D K LY+ FSAFG I+++ K+M D D G S+G+ F+ + +  A+D AIE MNG+ L   ++ V  +  +KD + E     +E
Sbjct:   34 GPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188          

HSP 2 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            +GY FV F+++  AD AI+ +N   L G  +       R ++ ++ +       N++I N   D+D++ L D FS +G  ++  K+M D  +G S+GFGF+S+DS EA+  A+E MNG+ +  + I V  A KK
Sbjct:  137 KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 52/164 (31.71%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  144 LLRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 632
            +L+ YF      GP+ N+ +  D+  N +  Y FVE+    DA+ A++ LN  ++    +++N A Q ++S  D   NLF+G+L+ +VD++ L + F  F   ++   +M D  TG+SRG+GF+S+ S + +  A+++M GQ L  R + +++A K+D     +
Sbjct:   90 ILKQYFQV---GGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNN 248          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 50/153 (32.68%), Postives = 87/153 (56.86%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGER 629
            AGP++++ + +D++T    GY +V ++   DA  A++ LN   + G+P+R+  + +D      G  N+FI NL   +D K LY+ FSAFG I++        D    +G+GF+ +   E+++ AI+ MNG +L  R+I V  +   K+ + ER
Sbjct:   25 AGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKD 614
            GP+ ++ V +D VT    GY +V +   E    AI+ LN  ++ G+P R+  + +D      G+ N+FI NL P +D K L++TFS FG ++ + K+  D + GNSRGFGF+ +     +  AIEA+NG  +   ++ V+ +  KKD
Sbjct:   74 GPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL-SCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD 218          

HSP 2 Score: 77.0258 bits (188), Expect = 1.034e-13
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSR 689
            Q G +V+  + KD      +G+GFV F     A  A++ LN  +   + + V +A +                 +K +   G NLFI NLD  +D++ L + F+ +G I T+ ++MRD + GNS+GFGF+ + S E +  A+   N Q +  + + V+ A +KD    R    A++I A N    Q+ +
Sbjct:  253 QYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARNQIRFQQQQ 435          

HSP 3 Score: 20.4014 bits (41), Expect = 1.034e-13
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELF 172
            YV N+D + T+E   +LF
Sbjct:  234 YVKNIDVETTDEEFEQLF 251          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.249e-17
Identity = 49/149 (32.89%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            Q GP  +  +  +  +N    Y FVEF    DA  A+  +N  K+ GK ++VN A   S  KK      ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI  M GQ+L  RQI  ++A +K
Sbjct:   31 QIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176          

HSP 2 Score: 27.7202 bits (60), Expect = 5.249e-17
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  104 QDATAYVGNLDPQVTEELLWELF 172
            Q  T YVGNL   VTE L+ +LF
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLF 29          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PABP3_ARATH5.884e-2031.79Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_MAGGR1.004e-1933.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO1.239e-1935.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE1.712e-1938.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI2.728e-1935.53Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PAB4L_HUMAN3.229e-1836.71Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PUB1_YEAST7.193e-1831.71Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
PAP1M_HUMAN7.193e-1832.68Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_KLULA1.227e-1736.05Polyadenylate-binding protein, cytoplasmic and nuc... [more]
TIAR_HUMAN5.249e-1732.89Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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