FC868767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16 Identity = 57/159 (35.85%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 620 +S FGS G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ +L +++K + FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ + ITV +A K Sbjct: 51 KSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 204
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16 Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 620 +S FGS G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 56 KSLFGSI---GDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.152e-16 Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 3 Query: 237 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611 Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI M GQ+L RQI ++A +K Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 HSP 2 Score: 27.7202 bits (60), Expect = 1.152e-16 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 2 Query: 104 QDATAYVGNLDPQVTEELLWELF 172 Q T YVGNL VTE L+ +LF Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLF 29
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16 Identity = 54/183 (29.51%), Postives = 102/183 (55.74%), Query Frame = 3 Query: 54 LLELGPICWANTPPREIKMPQLMS-AISIPRLLRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD--KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 593 +L + PI A PP ++ + A + ++ + S + +++V +D T GY +V F + DA+ A+ LN ++GKP R+ + +D K+ +VG N+F+ NL+ VD +LYDTFS+FG I++ + + G S+G+G++ +++ ++++ AIE +NG + + I V Sbjct: 168 ILSMSPI-GAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGNILS---CKVEFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16 Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 620 +S FGS G + + + +D++T GYGFV + DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 56 KSLFGSI---GDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/162 (35.19%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGER 629 RS FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K + Sbjct: 56 RSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/162 (35.19%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGER 629 RS FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K + Sbjct: 68 RSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/162 (35.19%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 150 RSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGER 629 RS FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K + Sbjct: 63 RSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 83 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16 Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620 L+S FGS G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 55 LKSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bpback to top |