FC868767

Overview
NameFC868767
Unique NameFC868767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 620
            L+S FGS    G + +  + +D++T     GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   82 LKSLFGSI---GEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            QAG V    V  +R T+  +G+GFV   S ++A+ A++  N   L G+ + VNKA+       +  +  +    +++GNL  DVD   L   FS  G +V   +++ D +TG SRGFGF++    +  + AI A++GQ L  R I V+ A ++
Sbjct:  172 QAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 539
            LR YFG   + G V ++ + KD  T   +G+GF+ F      D  +K  +++   GK I   +A   +   D    +F+G + PDV  K   + FS +G I+ + ++M D DTG SRGFGF++YDS +A D
Sbjct:  175 LREYFG---KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIP-RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVD 298          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602
            LRS F S    G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602
            LRS F S    G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.302e-14
Identity = 48/153 (31.37%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  174 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            QAG V    V  +R T+  +G+GFV   + E+AD A+++ +   L G+ + VNKA+       +  ++      +++GN+  D+D+  L   FS  G +V + +++ D ++G SRGFGF++  S      AI  ++GQ L  R I V+ A ++
Sbjct:  119 QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVV-SARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          

HSP 2 Score: 23.483 bits (49), Expect = 1.302e-14
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELF 172
            E ++DA  +VGNL   +  E L +LF
Sbjct:   92 EPSEDAKLFVGNLPYDIDSEGLAQLF 117          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 3
Query:  177 AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD--------------------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602
            AG V  V V  D++T   +G+GFV   S  + + A +  N  +L G+P+RVN      K  D                           G  +++GNL   VD+  L   FS  G +V   +++ D D+G S+GFGF++YDS +    AI++++G  L  RQI VS A
Sbjct:  114 AGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  147 LRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 602
            LRS F S    G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +++   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   36 LRSLFSSI---GEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.714e-14
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  186 VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            + +V + KD  +     YG+  F S +DA+ AI+  N   L GK IRV  +  + D +   VG N+F+ NL   V   +L D F  FG IV+    +   + G SRG+GF+ ++  +A+ AAI+ +N   + +++I V    KK
Sbjct:   50 LTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190          

HSP 2 Score: 27.335 bits (59), Expect = 4.714e-14
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELF 172
            A+ YVG+L P VTE +L++ F
Sbjct:   24 ASLYVGDLHPSVTEGILYDAF 44          

HSP 3 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 59/204 (28.92%), Postives = 98/204 (48.04%), Query Frame = 3
Query:  144 LLRSYFGSCFQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPTLY 701
            LLR  F    + G +V++ + KD    L +GY FV F + EDA  A + +N  K   K + V +A                  +++K +   +N+++ N++  V E+ L   FS  G I T+ K+M D + G S+GFGF+ + + E +  A++  +GQ    + + V+ A KK D K +       R+ A  + SS    P  Y
Sbjct:  216 LLREKFA---EFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTY 413          

HSP 4 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  231 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 611
            +GYGFV+F  E+ A  AI+ LN   +  K I V K  +     K  +   NL++ NLD DV E LL + F+ FG IV +  I +D +    RG+ F+++D+ E +  A E +NG    ++ + V  A KK
Sbjct:  152 RGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279          
BLAST of FC868767 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  180 GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-------------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 602
            G +    V  D+ +   + +GFV  ++ EDA+  I+ LN  ++ G+ I+VN   +  + +D+                ++IGNL   V  +LL D FS  G ++   K+ R P T  S GFGF+S+ S E  +AAI+A+N   L  ++I V+ A
Sbjct:  108 GAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVL-GAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
The following BLAST results are available for this feature:
BLAST of FC868767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ELAV2_XENLA5.699e-1535.40ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ROC3_ARATH9.722e-1533.3331 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
HRP1_YEAST1.270e-1435.88Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
ELAV1_XENTR1.270e-1435.71ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_HUMAN1.270e-1435.71ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ROC3_NICSY1.302e-1431.3728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH2.166e-1432.14Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELV1B_XENLA3.694e-1435.06ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
PABPX_ARATH4.714e-1433.33Probable polyadenylate-binding protein At2g36660 O... [more]
RRP2_SPIOL4.825e-1431.8230S ribosomal protein 2, chloroplastic OS=Spinacia... [more]

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Properties
Property NameValue
Genbank descriptionC31004E08EF AbioticL1 Citrus clementina cDNA clone C31004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868767 ID=FC868767; Name=FC868767; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATTCCGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTTCAAGCAGGTCCTGTTGTTAATGTGTAT
GTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGA
GTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGA
TAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAA
AAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGA
TGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTG
TTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGT
TTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGA
GGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATG
CATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGA
ATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCACACTTTA
TTTG
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