FC868787

Overview
NameFC868787
Unique NameFC868787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH1_PICST (Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 45/139 (32.37%), Postives = 59/139 (42.45%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 642
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C +CE C +  E  C K  L+       G    G +  +  A+     R P    L  AAP+LCAGITVY  LK
Sbjct:   33 EILINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVGIGSNVTGWELGDYAGIKWLNGSCLNCEFCQHSDEPNCAKADLS-------GYTHDGSFQQYATADAVQAARLPKGTDLAQAAPILCAGITVYKALK 164          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 48/160 (30.00%), Postives = 67/160 (41.88%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ C +  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK   L   + +  S A  GL S
Sbjct:   60 EILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLS-------GYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALKTADLKPGQWVAISGAAGGLGS 212          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH2_KLUMA (Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus GN=ADH2 PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 47/160 (29.38%), Postives = 65/160 (40.62%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C +CE C    E+ CP   L+       G    G +  +  A+       P    L   AP+LCAG+TVY  LK   +   + +  S A  GL S
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVAMGDNVKGWKIGDLAGIKWLNGSCMNCEECELSNESNCPDADLS-------GYTHDGSFQQYATADAVQAAHIPAGTDLAQVAPILCAGVTVYKALKTAEMKAGDWVAISGAAGGLGS 185          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH2_CANAL (Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 48/160 (30.00%), Postives = 67/160 (41.88%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            ++ + V Y G+CHTDL   K +W  +   P+V GHE AG V                       +C +CE C +  E  C +  L+       G    G +  +  A+     R P    L   AP+LCAG+TVY  LK   L   + +  S A  GL S
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLATKLPLVGGHEGAGVVVALGENVKGWKVGDYAGVKWLNGSCLNCEYCQSGAEPNCAEADLS-------GYTHDGSFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKALKTAELEAGQWVAISGAAGGLGS 185          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH1_CANAL (Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 49/160 (30.63%), Postives = 67/160 (41.88%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            ++ + V Y G+CHTDL   K +W  +   P+V GHE AG V                       +C SCE C    E  C +  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK   LA  + +  S A  GL S
Sbjct:   35 ELLIHVKYSGVCHTDLHARKGDWPLATKLPLVGGHEGAGVVVGMGENVKGWKIGDFAGIKWLNGSCMSCEFCQQGAEPNCGEADLS-------GYTHDGSFEQYATADAVQAAKIPAGTDLANVAPILCAGVTVYKALKTADLAAGQWVAISGAGGGLGS 187          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.785e-11
Identity = 40/148 (27.03%), Postives = 64/148 (43.24%), Query Frame = 1
Query:  211 RETGDEDVRLKVLYCGICHTDLSNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGL 654
            RE    +  +K  YCG+CHTDL ++KN     +  +  GHE  G V E                     AC +CE C    E  C  ++         G    G  ++ ++ +  Y V+ P+++   AA+ + CAG+T Y  +K  G+
Sbjct:   20 RELKPGEALVKTEYCGVCHTDL-HVKNADFGDVTGVTLGHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVL-------NAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGI 159          

HSP 2 Score: 21.1718 bits (43), Expect = 3.785e-11
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  663 GKHVGIVGLGGLG 701
            G+ +G+ G+GGLG
Sbjct:  162 GQWLGVFGVGGLG 174          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH3_YEAST (Alcohol dehydrogenase 3, mitochondrial OS=Saccharomyces cerevisiae GN=ADH3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 47/165 (28.48%), Postives = 67/165 (40.61%), Query Frame = 1
Query:  214 ETGDEDVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            E    ++ + V Y G+CHTDL     +W   +  P+V GHE AG V +                     +C +CE C +  E+ CP   L+       G    G +     A+     +      L   AP+LCAG+TVY  LK   L   + +  S A  GL S
Sbjct:   55 EPKPNEILINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVKLGSNVKGWKVGDLAGIKWLNGSCMTCEFCESGHESNCPDADLS-------GYTHDGSFQQFATADAIQAAKIQQGTDLAEVAPILCAGVTVYKALKEADLKAGDWVAISGAAGGLGS 212          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 44/144 (30.56%), Postives = 61/144 (42.36%), Query Frame = 1
Query:  214 ETGDEDVRLKVLYCGICHTDLSNIKNEWGFSLFP-MVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 642
            + G   V +K    G+CHTDL   K +W     P  +PGHE  G V +                     AC  C  C    E  C     T  S+  DGT     ++ + +A+  ++ R P  +    AAP+LCAG+TVY  LK
Sbjct:   24 QPGPGQVLIKYEATGVCHTDLHAAKGDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGVPWLHTACGCCTPCRTGWETLCGSQQNTGYSV--DGT-----FAQYGLADPDFVGRLPARLEFGPAAPVLCAGVTVYKGLK 160          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH2_YEAST (Alcohol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=ADH2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/179 (28.49%), Postives = 70/179 (39.11%), Query Frame = 1
Query:  172 DSSGHLSPFKFSRRETGDEDVRLKVLYCGICHTDLSNIKNEWGF-SLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            +S+G L        +    ++ + V Y G+CHTDL     +W   +  P+V GHE AG V                       +C +CE C    E+ CP   L+       G    G + ++  A+       P    L   AP+LCAGITVY  LK   L        S A  GL S
Sbjct:   14 ESNGKLEHKDIPVPKPKPNELLINVKYSGVCHTDLHAWHGDWPLPTKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS-------GYTHDGSFQEYATADAVQAAHIPQGTDLAEVAPILCAGITVYKALKSANLRAGHWAAISGAAGGLGS 185          
BLAST of FC868787 vs. ExPASy Swiss-Prot
Match: ADH1_YEAST (Alcohol dehydrogenase 1 OS=Saccharomyces cerevisiae GN=ADH1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 48/160 (30.00%), Postives = 64/160 (40.00%), Query Frame = 1
Query:  229 DVRLKVLYCGICHTDLSNIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQESM*ASLALAGLVS 705
            ++ + V Y G+CHTDL     +W   +  P+V GHE AG V                       +C +CE C    E+ CP   L+       G    G +  +  A+       P    L   AP+LCAGITVY  LK   L     +  S A  GL S
Sbjct:   33 ELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS-------GYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGS 185          
The following BLAST results are available for this feature:
BLAST of FC868787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ADH1_PICST6.068e-1232.37Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1... [more]
ADH4_KLULA1.352e-1130.00Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH2_KLUMA3.011e-1129.38Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus... [more]
ADH2_CANAL3.011e-1130.00Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH... [more]
ADH1_CANAL3.011e-1130.63Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH... [more]
ADH_STAEQ3.785e-1127.03Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH3_YEAST6.708e-1128.48Alcohol dehydrogenase 3, mitochondrial OS=Saccharo... [more]
ADHA_RHIME8.761e-1130.56Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]
ADH2_YEAST8.761e-1128.49Alcohol dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
ADH1_YEAST8.761e-1130.00Alcohol dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004G07EF AbioticL1 Citrus clementina cDNA clone C31004G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868787 ID=FC868787; Name=FC868787; organism=Citrus clementina; type=EST; length=717bp
TGTACACACATGAATATTCATATGAAACAAAAACAAAAACAGGTACTTTC
ACTCGTCTCATCACGTCGTTCAAACCACTATAATAATGATAACATTGCCG
TTCTCTCATCCAAAATGGCAAAATCACGAGAAGAAGAACATCCAGTAAAG
GCCTTTGGGTGGGCAGCCCGAGACAGCTCCGGCCATCTCTCCCCATTCAA
ATTCTCCAGAAGGGAAACGGGTGATGAGGATGTGAGGCTGAAGGTATTGT
ATTGTGGGATCTGCCATACTGATCTCTCCAACATCAAGAATGAATGGGGC
TTCTCTCTCTTCCCTATGGTTCCTGGGCATGAAATTGCAGGGGAAGTGAC
AGAAGTTGGTAGCAAAGTAAGAAAGGTTAAAGTGGGAGATAAAGTTGGAG
TTGGATGCATGGTCGGTGCATGCCACAGCTGCGAGAGCTGTGCCAATGAC
CTTGAAAATTACTGTCCGAAAATGATACTCACCTACAGTTCCATTAACAC
TGACGGAACAATCACATACGGAGGCTACTCTGATCACATGGTTGCCAATG
AGCGCTACATTGTTCGATTCCCTGATAGCATGCCCCTTGATGCTGCTGCC
CCCCTGCTTTGCGCCGGGATTACCGTGTACAGTCCATTGAAATACTTTGG
ACTAGCAGAACAGGAAAGCATGTAGGCATCGTTGGCCTTGGCGGGCTTGG
TCAGTCGCTGTCAAATT
back to top