FC868817

Overview
NameFC868817
Unique NameFC868817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 9.775e-64
Identity = 126/173 (72.83%), Postives = 140/173 (80.92%), Query Frame = 3
Query:  144 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD  DDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 8.275e-63
Identity = 126/177 (71.19%), Postives = 139/177 (78.53%), Query Frame = 3
Query:  144 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD  DDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMS
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMS 186          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.081e-62
Identity = 122/172 (70.93%), Postives = 137/172 (79.65%), Query Frame = 3
Query:  144 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD  DDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 178          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.844e-60
Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  144 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD  DDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 180          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.254e-59
Identity = 114/181 (62.98%), Postives = 136/181 (75.14%), Query Frame = 3
Query:  111 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D  DDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMS
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMS 188          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 3
Query:  204 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDEPDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            +R+    V  A  ++ A      + +  RW+ +    D  DDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MS
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMS 163          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.787e-18
Identity = 60/118 (50.85%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  297 GLAYDEPDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            GLAYD  DDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMS
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMS 66          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  474 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62          
BLAST of FC868817 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  474 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 650
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLIS 62          
The following BLAST results are available for this feature:
BLAST of FC868817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ9.775e-6472.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE8.275e-6371.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.081e-6270.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.844e-6069.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.254e-5962.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.330e-3651.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.787e-1850.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC3.081e-1766.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP4.024e-1766.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC31005B05EF AbioticL1 Citrus clementina cDNA clone C31005B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868817 ID=FC868817; Name=FC868817; organism=Citrus clementina; type=EST; length=652bp
GAAAGAGCACAACACGCACCCAGTCCATTGCTTCGCTTTCCTTTGCCTGC
ATTGCAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGC
TAGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTG
CAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTA
AGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTAC
TGCTGAAGTCGATGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCC
TTGCCTACGACGAACCTGATGACCAACAAGACATCACCAGAGGAAAAGGT
GCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGC
TGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACT
TGGACAACACGATGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAG
CTTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGT
TCCTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCC
AATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACCCAATTATGATGAGT
GC
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