FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVU (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus GN=rhlB PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32 Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644 +TE +F+DL L+ V+E L + GFEFCTP+QA +P+L S +D+A A TG+GKTLAF+ + A R+P Q +I++PTREL+ QIY+ A+P I++ +K+ L GG + K+ + G ++LIGT GR+ D ++ V + N++ +VLDEADR+ D+GF K I ++ R+P Sbjct: 6 ITEQKFADL--GLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIAS-TGIKAALAYGGESYDKQLTKL-QGGVDVLIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_VANPO (ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32 Identity = 84/202 (41.58%), Postives = 123/202 (60.89%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 + DL+ + + A+ GFE TPVQAATIPL KDV VD+ TGSGKT++FV+P+ E + A++ + K +I+SPT+EL+ QI+ V + F+ P+ ++S LLVG V+ DV E +LIGTPGR+ D + ++ + +++LDEADRLLD+ F K + I++ LPK RRTGLFS+ T Sbjct: 7 WDDLEYPIQPWIRSAVDVMGFENMTPVQAATIPLFARNKDVVVDSVTGSGKTVSFVIPIFEKIVQEEANTTKMKKGHFHSLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQILIGTPGRILDFL-KIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTGLFSATIT 207
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_PICST (ATP-dependent RNA helicase HAS1 OS=Pichia stipitis GN=HAS1 PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32 Identity = 83/188 (44.15%), Postives = 123/188 (65.43%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683 LSEP + A+++ GF+ T VQA TIP L + KDV A TGSGKTLAF++P +E+L S KP G+I+ SPTREL+ QI+ VA+ ++ ++ +GG + + +K+ + G NLLI TPGRL D ++ F+NL+ LV+DEADR+L++GF++++ II LPK R++ LFS+ T Sbjct: 110 LSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLY--SLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIV-IGGANRRQEAEKLAK-GVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEERQSMLFSATQT 293
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31 Identity = 81/199 (40.70%), Postives = 124/199 (62.31%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA--SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674 +TE +F+DL L V+E L + GF++CTP+QA +P+L + +D+A A TG+GKTLAF+ L + RKP+Q +I++PTREL+ QIY+ A +++ +K+ L GG + KI EEGA++LIGT GR+ D + V + +++ +VLDEADR+ D+GF K I ++ R+ PK R LFS+ Sbjct: 6 ITEQKFADLD--LLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVAS-TGIKAALAYGGESYDKQLGKI-EEGADILIGTTGRIIDFY-KQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH31_ARATH (DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31 Identity = 79/200 (39.50%), Postives = 122/200 (61.00%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA---SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 LT+TRF LS L+A+ +AG+E T VQ AT+P++ KDV A TG+GKT+AF++P +E++ ++ S K I+ ++I PTREL++Q A + P + +++GG + + K+++ +L+ TPGRL D +E + +++LVLDEAD LLDMGF+K I IIS +PK R+T LFS+ Sbjct: 245 LTKTRFDHYP--LSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSA 442
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_DEBHA (ATP-dependent rRNA helicase SPB4 OS=Debaryomyces hansenii GN=SPB4 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31 Identity = 84/206 (40.78%), Postives = 123/206 (59.71%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL-----------RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 +S LK L + EA+ G+ TPVQA+TIPL KDV V+A TGSGKTLAFV+P+++ L +K H ++ +I+SPTREL+ QI V + +P+ +K+ LLVG + V+ D+ ++LI TPGRL D + + + ++EI VLDEAD+LLD+ F++ + I+ +LPK RRTGLFS+ Sbjct: 10 WSVLKCDLHPWIKEAIKSLGYPTMTPVQASTIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYNIDEEGENPEPVKKGH-MLSIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILIATPGRLLDFLS-SNYVKTNSVEIAVLDEADKLLDISFERDVIKILKQLPKQRRTGLFSA 213
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_YEAST (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae GN=SPB4 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 3 Query: 162 GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 GFE TPVQA+TIP+L KDV VD+ TGSGKT AFV+P++E + A++++ K +II+PTRELS QI V F+ P +K LLVG E V+ DV +LIGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFS+ Sbjct: 26 GFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_YEAS7 (ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae (strain YJM789) GN=SPB4 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 3 Query: 162 GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 GFE TPVQA+TIP+L KDV VD+ TGSGKT AFV+P++E + A++++ K +II+PTRELS QI V F+ P +K LLVG E V+ DV +LIGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFS+ Sbjct: 26 GFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_SCHPO (ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe GN=spb4 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 76/184 (41.30%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 147 ALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD--------VKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 A+A GF+ TPVQA IPL KD+ V+A TGSGKTLA+++P + + R + + +I++PTREL++QI++V + ++ PD V + + G + D+ E+ +++IGTPGRL +++ + ++LEIL+LDEAD L+DMGFQ+ + IIS+LPK RRTGLFS+ Sbjct: 15 AVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETG--LGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSA 193
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31 Identity = 84/204 (41.18%), Postives = 128/204 (62.75%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT+ FS DL PAL + L AGF CTP+QA T+P+ DVA A TG+GKTLAF+V ++ ++R A + RKP +I++PTREL+ QI+ A F + L ++ L+ GGV+ +++ ++G +++I TPGRL D +++ V+ EI VLDEADR+ D+GF K I +++ R+P+ R+T LFS+ Sbjct: 3 DKPLTDVTFSSFDLHPAL----IAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSA 200 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |