FC868831

Overview
NameFC868831
Unique NameFC868831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT13_SOLLC (Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33
Identity = 75/134 (55.97%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  218 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            ++++ YLLFSAYLVF MQLGFAMLCAGSVRAKN MNIMLTNV+D                    SN FIG   FALK  P+S++DYS+FLYQW               ERTQF AYL++S FLTGFVY VV+HW
Sbjct:   12 SINAIYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSLSYYLFGFAFAFGD-SNPFIGASYFALKDIPSSSYDYSFFLYQWAFAIAVAGITSGSIAERTQFTAYLVFSFFLTGFVYPVVAHW 144          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT1_CAEEL (Putative ammonium transporter 1 OS=Caenorhabditis elegans GN=amt-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.271e-13
Identity = 43/136 (31.62%), Postives = 64/136 (47.06%), Query Frame = 2
Query:  221 VDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNG---FIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            V+S +L   A ++F MQ GFA L AG+VR+KNT NI++ N+LD                      G   F+G   F L  F     DY  F +Q+               ER +F+ Y+ Y + ++ F+Y V++HW
Sbjct:   29 VNSFFLCSMALIIFFMQCGFAYLEAGAVRSKNTTNILIKNLLDSCICIIGYWAIGWALAYGDSGEGVNLFVGHSQFFLSGFS----DYPRFFFQYVFSATAATIVSGAVAERCEFITYVTYCTVISTFIYPVLTHW 160          
BLAST of FC868831 vs. ExPASy Swiss-Prot
Match: AMT3_DICDI (Ammonium transporter 3 OS=Dictyostelium discoideum GN=amtC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 2
Query:  215 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPS-NGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYLVVSHW 619
            + +D++++L +A LVF MQ GF ML AG VRAKNT +I+L N+++                    + N F+G  NF L  +      Y+Y++ QW               ER Q   Y++++   T  +Y  V+HW
Sbjct:   22 FYMDTSWVLDAANLVFFMQAGFGMLEAGMVRAKNTKSILLKNLINTAICAISYYCVGHSFAYGKVNPNSFVGFGNFFLMDYT----HYAYWMIQWAYAATATTIATGAMAERLQLHCYILFTLVQTILIYPFVAHW 153          
The following BLAST results are available for this feature:
BLAST of FC868831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AMT13_SOLLC1.244e-3355.97Ammonium transporter 1 member 3 OS=Solanum lycoper... [more]
AMT1_CAEEL9.271e-1331.62Putative ammonium transporter 1 OS=Caenorhabditis ... [more]
AMT3_DICDI3.895e-1130.88Ammonium transporter 3 OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionC31005D02EF AbioticL1 Citrus clementina cDNA clone C31005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868831 ID=FC868831; Name=FC868831; organism=Citrus clementina; type=EST; length=619bp
GGTCCTTCTTTGAAACAAAAACTGCCAAGTTTGACTTTTCAAACTCTTTC
AAATCTCAGGCAACCCAAGGTGGGAAGCCATGGCAACGTCCCTGAGTTGT
TCAGCGGACCAACTCGCCAGCTTCTTTGGCCCCAACGCCACCGACGCCAC
GTCAGCAGCCTCCTTAATCTGCCCCCAACTCGAAGCCATCAACAATAAGT
TCTCCGACACCGCATACGCCGTCGACTCCACCTACCTCCTCTTCTCCGCC
TACTTAGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTC
CGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACG
CCGCCGCCGGCGGCCTCTTCTACTACCTTTTCGGCTTCGCCTTCGCCTTC
GGCACCCCATCCAACGGCTTCATCGGCCGCCACAACTTCGCCCTCAAGTC
CTTCCCCACCTCCAACTTCGACTACAGCTACTTCCTCTACCAATGGGCCT
TCGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGCACC
CAGTTCGTCGCCTACTTAATCTACTCCTCCTTCCTCACGGGCTTCGTCTA
CCTCGTCGTCTCCCATTGG
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