FC868834

Overview
NameFC868834
Unique NameFC868834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868834 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPD 673
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPE 204
The following BLAST results are available for this feature:
BLAST of FC868834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_SOLLC4.663e-1160.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005D05EF AbioticL1 Citrus clementina cDNA clone C31005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868834 ID=FC868834; Name=FC868834; organism=Citrus clementina; type=EST; length=680bp
GATATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCG
CATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGC
CAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGC
TGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGA
GCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTG
GCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGC
CAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCC
TCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCATTTGC
back to top