FC868835

Overview
NameFC868835
Unique NameFC868835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  +V+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+
Sbjct:  186 TVMMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDD 261
[Close]
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVAD 654
            T   I+ +LD  IRP +  DGG++     +  +V+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFD 252
The following BLAST results are available for this feature:
BLAST of FC868835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NFU1_DROVI4.663e-1142.11NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROAN7.954e-1142.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005D06EF AbioticL1 Citrus clementina cDNA clone C31005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868835 ID=FC868835; Name=FC868835; organism=Citrus clementina; type=EST; length=679bp
GGCGCAAAAAAAAAAAAAAAAGACAACAAAGACTGCGCCAACCGCCCGCG
ACCCCGCGTAACGAAAGCAAAATAAAACAGAAACACAGATCGATTCAATT
AATCGTTAAACCATCAATTTTTATCAAATCGAATCCCCTGAAAGGAAAAA
AAAAAAGTATACACCCGAAGAAATACAAAGAGAAAGATGCAAGGCGTTGT
GTTGAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTT
GTTCTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTT
TCGCTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACT
GCTGATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGG
CTACTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAA
AGTGTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGT
GGCATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAG
CATGTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAG
CGTCGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGC
AGATGAAGAAACTGGGCTTGAGCTGAATG
back to top