FC868846

Overview
NameFC868846
Unique NameFC868846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.454e-68
Identity = 126/204 (61.76%), Postives = 156/204 (76.47%), Query Frame = 3
Query:   87 MEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            +EEIR AQRA+G ATILAI TATP +CV Q+DY DYYF +T SE M+            SMI+KR++ LTEE+L+ +PN+  +M  SL+ RQ+I   EVPKLGKEAA KA+KEWGQPKS ITHL+FCT++GV+MPGADY+L  L+GL   V+R+M+Y QGCYAG T+LR AKDLAEN  G+RVLVVCSE T+ TFRGPS   +D
Sbjct:    1 VEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALD 204          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.454e-68
Identity = 125/207 (60.39%), Postives = 155/207 (74.88%), Query Frame = 3
Query:   81 VTMEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGT-SLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            + +E  RK+QRA+G A+ILAI TA PPN V Q+ YPDYYF +TN+E  T            S I+KRHM LTEEILK NP +C  +   SLD RQ +   EVP+LGKEAA KAI+EWGQPKS ITHLIFCT+   D+PGAD+++ +L+GL+P VKR+ ++Q GC+AG T+LRLAKDLAEN +G+RVLVVCSENT  TFRGPS TH+D
Sbjct:    7 IDLEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRVTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAAEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGPSETHLD 213          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.735e-68
Identity = 127/207 (61.35%), Postives = 155/207 (74.88%), Query Frame = 3
Query:   81 VTMEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGT-SLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            V +E  RK+QRA+G A+ILAI TA PPN V Q+ YPDYYF  TN+E  T            S I+KRHM LTEEILK NP +C  +   SLD RQ +  VEVP+LGKEAA KAI+EWGQPKS ITHLIFCT+   D+PGAD+++ +L+GL+P VKR+ ++Q GC+AG T+LRLAKDLAEN +G+RVLVVCSENT  TFRGPS TH+D
Sbjct:    7 VDLEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRNTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAVEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGPSETHLD 213          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSB_PETHY (Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.699e-67
Identity = 124/198 (62.63%), Postives = 152/198 (76.77%), Query Frame = 3
Query:  105 AQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            AQRAEG A ILAI TATP + V Q  YPDYYF +TNS+H+             +MI+KRHM LTEE+L+ NP +C H   SLD RQDI + E+PKLGKEAA KAI EWGQPKS ITHL+FCT +GVDMPGAD QL +L+GL+P V+R+M+YQQGC+AG T+LRLAKDLAEN +G+RVLVVC+E++   FRGPS  ++D
Sbjct:   13 AQRAEGPAKILAIGTATPFHWVDQNSYPDYYFRVTNSQHLVDLKEKFRRICSKTMIKKRHMFLTEELLRKNPTLCSHNEPSLDIRQDILVSEIPKLGKEAALKAIGEWGQPKSTITHLVFCTRSGVDMPGADCQLVKLLGLSPSVQRLMMYQQGCFAGGTMLRLAKDLAENNKGARVLVVCAESSAIGFRGPSEANVD 210          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSB_IPOPU (Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.310e-67
Identity = 127/200 (63.50%), Postives = 152/200 (76.00%), Query Frame = 3
Query:   99 RKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            R+A+R EG A ILAI TATP + V Q  YPD+YF ITNS+H+             S IRKRH+ LTEE+LK NPN+C +  TSL+ RQDI + EVPKLGKEAA KAIKEWG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRLAKDLAE+ +G RVLVVC+E TI  FRGPS    D
Sbjct:   14 RRAKRLEGDAKILAIGTATPASWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLCTYNETSLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAESNKGGRVLVVCAEITINIFRGPSLEQDD 213          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.310e-67
Identity = 127/198 (64.14%), Postives = 150/198 (75.76%), Query Frame = 3
Query:  105 AQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            A+R EG A +LAI TATP N V QA YPD+YF ITNSEH+             S IRKRH+ LT+E+LK NPN+C +   SL+ RQDI + EVPKLGKEAA KAIKEWG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRL KDLAEN +G+RVLVVCSE TI  FRGPS    D
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTKELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLVKDLAENNKGARVLVVCSEITINIFRGPSLEQDD 211          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.241e-67
Identity = 126/200 (63.00%), Postives = 150/200 (75.00%), Query Frame = 3
Query:   99 RKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            R+ +R EG A ILAI TATP N V Q  YPD+YF ITNS+H+             S IRKRHM LTEE+LK NPN+C +   SL+ RQDI + EVPKLGKEAA KAIKEWG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRLAKD+AEN +G+RVLVVCSE  +  FRGPS    D
Sbjct:   14 RREKRFEGHAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLDHKEKFRRICNKSKIRKRHMILTEELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDVAENNKGARVLVVCSEVMLSVFRGPSLQQED 213          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSB_IPONI (Chalcone synthase B (Fragment) OS=Ipomoea nil GN=CHSB PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.090e-66
Identity = 125/199 (62.81%), Postives = 150/199 (75.38%), Query Frame = 3
Query:  102 KAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            +A++ EG A I AI TATP N V Q  YPD+YF ITNS+H+             S IRKRH+ LTEE+LK NPN+C +  TSL+ RQDI + EVPKLGKEAA KAIKEWG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRLAKDLAE+ +G RVLVVC+E TI  FRGPS    D
Sbjct:   15 RAKKLEGDAKIWAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLCTYNETSLNTRQDILVAEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAESNKGGRVLVVCAEITINIFRGPSLEQDD 213          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.977e-66
Identity = 129/209 (61.72%), Postives = 153/209 (73.21%), Query Frame = 3
Query:   78 MVTMEEIRKAQR--AEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            M+T    R+A+R   EG A ILAI TATP N V Q  YPD+YF ITNS+H+             S IRKRHM LTEE+LK NPN+C +   SL+ RQDI + EVPKLGKEAA KAIK WG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRLAKDLAEN +G+RVLVVCSE  +  FRGPS    D
Sbjct:    7 MLTDTWSRRAKRFEIEGYAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSNIRKRHMVLTEELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKVWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAENNKGARVLVVCSEVMLSVFRGPSLQQED 215          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSA_IPOCO (Chalcone synthase A (Fragment) OS=Ipomoea cordatotriloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.112e-66
Identity = 126/198 (63.64%), Postives = 148/198 (74.75%), Query Frame = 3
Query:  105 AQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            A+R EG A +LAI TATP N V QA YPD+YF ITNSEH+             S IRKRH+ LTEE+LK NPN+C +   SL+ RQDI + EVPKLGKEAA KAIKEWG+P S ITHL+FCT++GVDMPGAD+QLT+L+GLN  VKR+M+YQQGC AGA +LRL K LAEN +G+RVLVVCS  TI  FRGPS    D
Sbjct:   14 AKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTEELLKENPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLVKGLAENNKGARVLVVCSGITINIFRGPSLEQDD 211          
The following BLAST results are available for this feature:
BLAST of FC868846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS3_VITVI7.454e-6861.76Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
DPS1_PINST7.454e-6860.39Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]
DPS2_PINST9.735e-6861.35Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
CHSB_PETHY3.699e-6762.63Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=... [more]
CHSB_IPOPU6.310e-6763.50Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE... [more]
CHSA_IPOTF6.310e-6764.14Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOCO8.241e-6763.00Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSB_IPONI4.090e-6662.81Chalcone synthase B (Fragment) OS=Ipomoea nil GN=C... [more]
CHSB_IPOTF6.977e-6661.72Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPOCO9.112e-6663.64Chalcone synthase A (Fragment) OS=Ipomoea cordatot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005E09EF AbioticL1 Citrus clementina cDNA clone C31005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868846 ID=FC868846; Name=FC868846; organism=Citrus clementina; type=EST; length=700bp
AGACACAATCGCGAAAGCGCATACTTATTAATTAACTAAGTTTAAGTACT
GTTTTGGAAGCAATCTGACGATCAGAGATGGTAACAATGGAGGAGATTAG
AAAGGCTCAGCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGG
CAACGCCGCCCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTC
GGGATCACCAACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCT
CTTGTGTGAGAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAG
AGATTTTAAAAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTC
GATGCGCGCCAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGA
GGCGGCAACCAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCA
CCCATCTCATTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGAC
TATCAGCTCACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGAT
GATATATCAACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTA
AAGATTTGGCTGAAAACAAACAGGGCTCTCGTGTTCTTGTTGTTTGTTCT
GAGAACACAATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTC
back to top