FC868846

Overview
NameFC868846
Unique NameFC868846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.846e-48
Identity = 89/131 (67.94%), Postives = 108/131 (82.44%), Query Frame = 3
Query:  306 LKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            LK NPNMC +   SLDAR+D+ + EVP++GKEAATKAIKEWGQP S ITHLIFCT++GV +PG DY+L  L+GL+P VKR M+Y QGC+AG T+LRLAKDLAEN + +RVL+VCSENT  TFRGPS T +D
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMD 131          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 3
Query:  390 LGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAEN +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLD 103          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 3
Query:  447 ITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            ITHLI CT++ VDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAEN +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLD 83          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  264 SMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSE 653
            S I+ RH+ + +     N     H+ T  D       V VP L ++A  +A+K+WG  K +ITH++  TS G+ +P  +++L  L+GLN DV+R+ +   GC AG + LR A  LA+    +R+LVVC+E
Sbjct: 2831 SQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTE 2958          
BLAST of FC868846 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:  549 MIYQQGCYAGATILRLAKDLAENKQGSRVLVVCSENTIPTFRGPSYTHID 698
            M+YQQGC+AG T+LRLAKDLAEN +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLD 50          
The following BLAST results are available for this feature:
BLAST of FC868846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY3.846e-4867.94Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA8.299e-4379.61Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.374e-2975.00Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
PKS1_DICDI2.058e-1736.92Probable polyketide synthase 1 OS=Dictyostelium di... [more]
CHSY_MALDO1.927e-1576.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005E09EF AbioticL1 Citrus clementina cDNA clone C31005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868846 ID=FC868846; Name=FC868846; organism=Citrus clementina; type=EST; length=700bp
AGACACAATCGCGAAAGCGCATACTTATTAATTAACTAAGTTTAAGTACT
GTTTTGGAAGCAATCTGACGATCAGAGATGGTAACAATGGAGGAGATTAG
AAAGGCTCAGCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGG
CAACGCCGCCCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTC
GGGATCACCAACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCT
CTTGTGTGAGAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAG
AGATTTTAAAAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTC
GATGCGCGCCAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGA
GGCGGCAACCAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCA
CCCATCTCATTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGAC
TATCAGCTCACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGAT
GATATATCAACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTA
AAGATTTGGCTGAAAACAAACAGGGCTCTCGTGTTCTTGTTGTTTGTTCT
GAGAACACAATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTC
back to top