FC868896

Overview
NameFC868896
Unique NameFC868896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I +DVT+LIG+TPMVYLN +V GCVA IAAKLE+M+PC SVKDRI +SMI DAE+KGLI+PGK
Sbjct:   67 IAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGK 129          

HSP 2 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            KTVL+E TSGNTGIGLAFIAASRGYKLI+ MP + S+ERR+IL+A
Sbjct:  129 KTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKA 173          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   82 SSSMEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            SS+  +   I +DVT+LIG+TPMVYLN +  GCVA IAAKLE+M+PC SVKDRI +SMI DAE+KGLI+PGK
Sbjct:   60 SSTEIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGK 131          

HSP 2 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            KTVL+E TSGNTGIGLAFIAASRGYKLI+ MP + S+ERR+IL+A
Sbjct:  131 KTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKA 175          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I  +  +LIG TPMVYLNNVV GCVA +AAKLE+M+PC SVKDRI YSMI DAE+KGLITPGK
Sbjct:   75 IADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGK 137          

HSP 2 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            K+VL+E TSGNTGIGLAFIAAS+GYKLI+ MP + S+ERR++LRA
Sbjct:  137 KSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRA 181          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I +DV++LIG TPMVYLNNV  G VA IAAKLE M+PC SVKDRI YSMI DAE KG+ITPGK
Sbjct:   67 IAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGK 129          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   97 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            D   I  +V++LIG TPMVYLN++  GCVA IAAKLE+M+PC SVKDRI YSM+ DAE KG I+PGK
Sbjct:  109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGK 175          

HSP 2 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 3
Query:  543 KTVLIEITSGNTGIGLAFIAASRGYKLIIIMPXTYSIERRIILRA 677
            K+VL+E TSGNTGIGLAFIAASRGY+LI+ MP + S+ERR++L+A
Sbjct:  175 KSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKA 219          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            I +DVT+LIG TPMVYLN V DGC+A IAAKLE M+PC SVKDRI  SMI +AE+ G ITP K
Sbjct:   99 IAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLESMEPCRSVKDRIGLSMINEAENSGAITPRK 161          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  106 EIKKDVTELIGHTPMVYLNNV--VDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGK 297
            +I  ++TELIG TP+V LN +  ++GC A+I  KLE M P +SVKDRI  +MI  AE +GLI PGK
Sbjct:    2 KIASNITELIGRTPLVRLNRIPLLEGCGAKIVVKLEGMNPAASVKDRIGINMINRAEQEGLIEPGK 67          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPI 321
            I +D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI P  +     +GN+ I
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGI 77          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPI 321
            I +D+T+LIG TP+V L  V DG VA I AKLE   P +SVKDRI  +M++ AE  GLI P  +     +GN+ I
Sbjct:    3 IAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGI 77          
BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  109 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPI 321
            I +DVT+L+G+TP+V L  V +G +A + AKLE   P +SVKDRI  +MI  AE+ GLI P  V     +GN+ I
Sbjct:    3 IAEDVTQLVGNTPLVRLRRVTEGALADVVAKLESFNPANSVKDRIGVAMIDTAEEAGLIKPDTVILEPTSGNTGI 77          
The following BLAST results are available for this feature:
BLAST of FC868896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CYSKP_CAPAN4.970e-2174.60Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU1.107e-2066.67Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH2.467e-2074.60Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL2.727e-1974.60Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH4.652e-1965.67Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK4_ARATH8.773e-1869.84Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_SYNY35.508e-1254.55Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCTU1.227e-1149.33Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO1.227e-1149.33Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_MYCLE3.570e-1148.00Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006B12EF AbioticL1 Citrus clementina cDNA clone C31006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868896 ID=FC868896; Name=FC868896; organism=Citrus clementina; type=EST; length=679bp
TATATATATTGTTTCTACAATATTGAAGAGAAAAAGTTACATTACCAGGC
TTGCTGCTTGATTTTTGAAAGTGTCTGATGAAGTAGCTCCATGGAGGACA
AGTGTGAAATTAAGAAAGATGTTACCGAATTGATAGGCCATACACCGATG
GTGTATCTCAATAATGTTGTGGATGGCTGTGTAGCACGTATTGCTGCCAA
GCTAGAAATGATGCAACCTTGCTCTAGTGTCAAAGACAGAATTGCATATA
GTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAGGGAAGGTA
TTCAATGGAAACTCTCCAATTCTAAAGTTGATTAATCATAAAAATTATGC
TATGAACTCAGTGTTTTTGTTTTCAGTCAACGTTAATAACTTCAACCAAG
CCCATCCTGCTTCTTAAAATTTTAAGAGTCTCTTGTGTTTTCCAAGACTT
CTGCTCAAACTGGGTTTACACTGCTCAAACTGATTGATAAACATGTTAAC
TAACAAATTTGCCGTCTGGATATGTTGGAATGTTGATGGTTAAAGACTGT
CCTCATTGAGATAACTAGTGGAAACACCGGTATTGGATTGGCCTTCATTG
CAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATNCACATATAGT
ATTGAGAGAAGAATAATTCTCAGAGCTTT
back to top