FC868896

Overview
NameFC868896
Unique NameFC868896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868896 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  106 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKVF----NGNSPI 321
            +I K +TEL+G TP++ LN ++    A +  KLE   P SSVKDRIA SMI+ AE +GLI+PG V     +GN+ I
Sbjct:    3 KIYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPGDVIIEPTSGNTGI 78
The following BLAST results are available for this feature:
BLAST of FC868896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CYSK_STRP67.954e-1148.68Cysteine synthase OS=Streptococcus pyogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionC31006B12EF AbioticL1 Citrus clementina cDNA clone C31006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868896 ID=FC868896; Name=FC868896; organism=Citrus clementina; type=EST; length=679bp
TATATATATTGTTTCTACAATATTGAAGAGAAAAAGTTACATTACCAGGC
TTGCTGCTTGATTTTTGAAAGTGTCTGATGAAGTAGCTCCATGGAGGACA
AGTGTGAAATTAAGAAAGATGTTACCGAATTGATAGGCCATACACCGATG
GTGTATCTCAATAATGTTGTGGATGGCTGTGTAGCACGTATTGCTGCCAA
GCTAGAAATGATGCAACCTTGCTCTAGTGTCAAAGACAGAATTGCATATA
GTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAGGGAAGGTA
TTCAATGGAAACTCTCCAATTCTAAAGTTGATTAATCATAAAAATTATGC
TATGAACTCAGTGTTTTTGTTTTCAGTCAACGTTAATAACTTCAACCAAG
CCCATCCTGCTTCTTAAAATTTTAAGAGTCTCTTGTGTTTTCCAAGACTT
CTGCTCAAACTGGGTTTACACTGCTCAAACTGATTGATAAACATGTTAAC
TAACAAATTTGCCGTCTGGATATGTTGGAATGTTGATGGTTAAAGACTGT
CCTCATTGAGATAACTAGTGGAAACACCGGTATTGGATTGGCCTTCATTG
CAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATNCACATATAGT
ATTGAGAGAAGAATAATTCTCAGAGCTTT
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