FC868909

Overview
NameFC868909
Unique NameFC868909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y2748_LISMF (UPF0189 protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_2748 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 68/145 (46.90%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            + + KGDIT+  VD     IVN AN  +LGGGG DGAIH+AAGP+L + C +V  +     CP GEA IT    L AS++IH VGPI+    + EA+ L + Y  +L +A    +  IAF  IS GVYG+P + AA VAL TV++
Sbjct:    3 ITVVKGDITEQDVD----VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEV--INRIGTCPAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRK 141          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y2902_LISIN (UPF0189 protein lin2902 OS=Listeria innocua GN=lin2902 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            + + KGDIT+ +VD     IVN AN  +LGGGG DGAIH+AAGP+L + C +V  +     CP GEA IT    L A  +IH VGPI+    + EA+ L + Y  +L +A   ++  IAF  IS GVYG+P + AA VAL TV++
Sbjct:    3 ITVVKGDITEQNVD----VIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEV--INRIGSCPAGEAVITSAGDLKAHFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRK 141          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y995_THETN (UPF0189 protein TTE0995 OS=Thermoanaerobacter tengcongensis GN=TTE0995 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.016e-24
Identity = 65/141 (46.10%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            KG+I    VD   DAIVN AN  ++GGGG DGAIH+A GP + E    + E   +  CP G A IT    L A +VIH VGPI+   + N +  L +AY  SL +A E N++ IAF +IS G YG+P E AA +AL  V +
Sbjct:    9 KGNI----VDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIRE--KQGGCPTGHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSISTGAYGFPVERAARIALRVVSD 143          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y6450_STRCO (UPF0189 protein SCO6450 OS=Streptomyces coelicolor GN=SCO6450 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            + + +GDIT+ S    +DAIVN AN  +LGGGG DGAIHR  GP +   C ++         P G A  T    L A  VIHTVGP++ A  +    L + Y+ SL  A E   + +AF AIS GVY +P ++AA +A+ TV
Sbjct:    4 ITLVQGDITRQS----ADAIVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGKGLPTGRAVATTAGDLDARWVIHTVGPVWSATEDRSGLLASCYRESLRTADELGARTVAFPAISTGVYRWPMDDAARIAVETV 141          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y1951_FUSNN (UPF0189 protein FN1951 OS=Fusobacterium nucleatum subsp. nucleatum GN=FN1951 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 63/137 (45.99%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  277 GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALST 684
            GDITK       +AIVN AN  +  GGG  GAI +AAG EL + C ++        C  GEA IT G+ LP  ++IHTVGP Y    N EA  L +AY  SL +A E  I+ IAF +IS G+Y +P +E A +AL+T
Sbjct:   11 GDITKIP---EVEAIVNAANSSLEMGGGVCGAIFKAAGSELAQECKEIGG------CNTGEAVITKGYNLPNKYIIHTVGPRYSTGENREAERLASAYYESLKLANEKGIRRIAFPSISTGIYRFPVDEGAKIALTT 138          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y189_ACISE (UPF0189 protein OS=Acinetobacter sp. (strain ED45-25) PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            + DIT ++V     AIVN AN+ +LGGGG D  IH+ AGP ++E C ++ + +    CP G+A +T    LPA ++IH VGP + D + N    L +AY N+L  A E +   ++F  IS GVYG+P ++AA +A+ T+
Sbjct:    8 QADITAFAVH----AIVNSANKSLLGGGGLDYVIHKKAGPLMKEECVRLNQEKG--GCPTGQAEVTTAGNLPAKYLIHAVGPRWLDGEHNEPQLLCDAYSNALFKANEIHALTVSFPCISTGVYGFPPQKAAEIAIGTI 140          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y189_STRNO (UPF0189 protein in sno 5'region OS=Streptomyces nogalater PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            + + +GDIT+      +DA+VN AN  +LGGGG DGAIHR  GP +   C  +   R     P G A  T    L A  VIHTVGP++ +  +    L + Y+ SL +A E   + +AF A+S GVY +P  +AA +A+ TV+
Sbjct:    4 ITLVQGDITRQH----ADALVNAANSSLLGGGGVDGAIHRRGGPAILAECRALRASRYGEGLPTGRAVATTAGDLDARWVIHTVGPVWSSTEDRSDLLASCYRESLRLAGELGARTVAFPALSTGVYRWPMGDAARIAVETVR 142          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: GDAP2_NEMVE (Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 58/148 (39.19%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  253 SAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDA--DSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            +A +V+  GDITK +    +DAIVN  NE +   G     +HRAAGPEL + C +       + C  GEA+I+ G+ LPA +VIHTVGP Y+    +  E++L + Y+N++ + +EN I  I    ++    GYP E+ A +AL TV+
Sbjct:   50 NAKVVLWNGDITKLA----ADAIVNTTNESLSDRGALSERVHRAAGPELMQECRQ-----QLLGCRTGEAKISEGYNLPARYVIHTVGPRYNTKYKTAAESALFSCYRNTMRLVRENKISTIGVCVVNTTKRGYPPEDGAHIALRTVR 188          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y189_TREMD (UPF0189 protein in tap1-dppD intergenic region OS=Treponema medium PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 58/147 (39.46%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPE--ASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            +GDIT   VD    AIVN AN  M G         D  IH  AG +LR  C  + + +     P G A+ITP F LP  +V+HTVGPI            L N+Y + L++A EN ++ IAF  IS GV+ +P ++AA +A++TV++
Sbjct:   91 RGDITTLKVD----AIVNAANSGMTGCWQPCHACIDNCIHTFAGVQLRTVCAGIMQEQGHEE-PTGTAKITPAFNLPCKYVLHTVGPIISGQLTDRDCTLLANSYTSCLNLAAENGVKSIAFCCISTGVFRFPAQKAAEIAVATVED 232          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y508_THEMA (UPF0189 protein TM_0508 OS=Thermotoga maritima GN=TM_0508 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  268 IKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            I KGDIT+  VD    AIVN ANE +  GGG  GAI RA G  ++E   ++ + R  V  P GEA +T   KL A +VIHTVGP++   S+ E   L  A  N+L  A E  ++ I+  AIS G++G+P E A  +    +++
Sbjct:  431 IVKGDITREEVD----AIVNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERGRV--PTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMPAISTGIFGFPKERAVGIFSKAIRD 567          
The following BLAST results are available for this feature:
BLAST of FC868909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
Y2748_LISMF7.738e-2546.90UPF0189 protein LMOf2365_2748 OS=Listeria monocyto... [more]
Y2902_LISIN3.840e-2446.21UPF0189 protein lin2902 OS=Listeria innocua GN=lin... [more]
Y995_THETN5.016e-2446.10UPF0189 protein TTE0995 OS=Thermoanaerobacter teng... [more]
Y6450_STRCO7.242e-2342.25UPF0189 protein SCO6450 OS=Streptomyces coelicolor... [more]
Y1951_FUSNN2.107e-2245.99UPF0189 protein FN1951 OS=Fusobacterium nucleatum ... [more]
Y189_ACISE3.594e-2241.01UPF0189 protein OS=Acinetobacter sp. (strain ED45-... [more]
Y189_STRNO3.043e-2139.86UPF0189 protein in sno 5'region OS=Streptomyces no... [more]
GDAP2_NEMVE8.853e-2139.19Protein GDAP2 homolog OS=Nematostella vectensis GN... [more]
Y189_TREMD2.848e-1939.46UPF0189 protein in tap1-dppD intergenic region OS=... [more]
Y508_THEMA1.846e-1841.26UPF0189 protein TM_0508 OS=Thermotoga maritima GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31006D06EF AbioticL1 Citrus clementina cDNA clone C31006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868909 ID=FC868909; Name=FC868909; organism=Citrus clementina; type=EST; length=695bp
GAGTCAACAAATAGCACGCTTACAAGAAGACTGATACGATTTCTGTTACC
AGCAACGCAACTTCCCCAAGCTACTAATTCTTCAACTTTCCCGAAATCTA
GAACTTCAGTTTCTGACAACTCTCTCGCAACAAGAGCAAAGGCAAAGACG
ATCTCAGTTGGTGATCGTGGTGTTGGTGTTAGAGCTGTGAGTGTGACGAT
GTCGTTATCGAGTGATCAACGAAGCGAGGAGGGTCATTTCAAGTTGTCTG
AATCGGCCGCTCTAGTGATCAAGAAAGGTGATATCACTAAGTGGTCCGTC
GATGGTTCGTCTGATGCCATTGTTAATCCGGCCAACGAGAGAATGCTTGG
AGGTGGTGGTGCAGATGGAGCCATACATAGGGCTGCAGGACCAGAGCTCC
GAGAAGCTTGCTGTAAGGTTCCAGAAGTCCGACCTGAAGTTCGCTGTCCC
ATCGGAGAAGCACGAATTACTCCAGGTTTCAAGTTGCCTGCATCGCATGT
GATCCATACTGTTGGTCCTATCTATGATGCGGATAGTAATCCTGAAGCCT
CTCTGAGAAATGCATACAAGAACAGCTTGAGCGTGGCCAAAGAAAACAAC
ATTCAATACATTGCTTTTACTGCCATCTCATGTGGTGTATATGGATATCC
TTATGAGGAAGCAGCCGCGGTAGCTCTATCTACAGTCCAAGAATT
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