FC868909

Overview
NameFC868909
Unique NameFC868909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y1252_SULAC (UPF0189 protein Saci_1252 OS=Sulfolobus acidocaldarius GN=Saci_1252 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  238 FKLSESAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            +KLS    ++++ GDITK      +DAIVN AN  +  GGG   AI R+ G  ++E   +   VR     P+GE  +T   KL A +VIH VGP Y  + + +  L +A + SL  A E  +  IA  AIS G+YGYPYE  A +    ++E
Sbjct:    5 YKLSNGLEVILENGDITKVE----ADAIVNAANSYLSHGGGVALAIVRSGGYIIQEESDEY--VRRNGPVPVGEVAVTTAGKLKARYVIHAVGPRYGIEGDDK--LESAIRRSLEKADELKLSSIALPAISTGIYGYPYEICARIMSKVMKE 148          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: GDAP2_DANRE (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  238 FKLSESAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDAD--SNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            F+   +  +V+  GD+   +      AIVN +NE +        +IHR AGPELR+   K+        C  GEA++T GF L A  +IHTVGP Y A   +  E+SL + Y+N L +AKE+ +  + F  IS     YP E+A  +AL TV+
Sbjct:   59 FRQDINNKIVLFNGDVALLNCT----AIVNTSNETLTDKNPISDSIHRHAGPELRDELLKLKG------CRTGEAKMTEGFDLAARFIIHTVGPKYKAKYRTAAESSLYSCYRNVLQLAKEHAMVSVGFCVISTVKRAYPVEDATHIALRTVR 201          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y302_STAAW (UPF0189 protein MW0302 OS=Staphylococcus aureus (strain MW2) GN=MW0302 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGA-----DGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLPASHVIHTVGPIY---DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            + + +GDIT   +D    AIVN AN R LG   A     D  IH  AG ++R  C ++  +R + R   +G+A+IT G+ LPA ++IHTVGP           +  L   Y + L +A ++++ ++AF  IS GV+ +P +EAA +A+ TV+
Sbjct:   87 IFVWQGDITTLKID----AIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI--IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVE 232          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y302_STAAS (UPF0189 protein SAS0302 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0302 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGA-----DGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLPASHVIHTVGPIY---DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            + + +GDIT   +D    AIVN AN R LG   A     D  IH  AG ++R  C ++  +R + R   +G+A+IT G+ LPA ++IHTVGP           +  L   Y + L +A ++++ ++AF  IS GV+ +P +EAA +A+ TV+
Sbjct:   87 IFVWQGDITTLKID----AIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI--IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVE 232          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y322_STAAR (UPF0189 protein SAR0322 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0322 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  262 LVIKKGDITKWSVDGSSDAIVNPANERMLGGGGA-----DGAIHRAAGPELREACCKVPEVRPEVRCP-IGEARITPGFKLPASHVIHTVGPIY---DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            + + +GDIT   +D    AIVN AN R LG   A     D  IH  AG ++R  C ++  +R + R   +G+A+IT G+ LPA ++IHTVGP           +  L   Y + L +A + ++ +IAF  IS GV+ +P +EAA +A+ TV+
Sbjct:   87 IFVWQGDITTLKID----AIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEI--IRQQGRNEGVGKAKITRGYNLPAKYIIHTVGPQIRRLPVSKLNQDLLAKCYLSCLKLADQQSLNHIAFCCISTGVFAFPQDEAAEIAVRTVE 232          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: PAR14_HUMAN (Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  244 LSESAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEA--SLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            L+    L++++GD+ +  VD     +VN +NE +   GG   A+ +AAGPEL+  C ++  V+ E R   G A I+   KLP  HVIH VGP +     P     LR A + SL +A++   + IA  AIS GV+G+P        +S ++E
Sbjct:  717 LAPGVVLIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQI--VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKE 862          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y919_STRP6 (UPF0189 protein M6_Spy0919 OS=Streptococcus pyogenes serotype M6 GN=M6_Spy0919 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  259 ALVIKKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            +L +  GDI   +VD    AIVN AN  +LG      G  D AIH  AG  LR AC  +   +      IG+A++T  + LPAS++IHTVGP      +        L   Y++SL +A +  +  +AF +IS G +G+P +EAA +A+ TV
Sbjct:   85 SLFLYHGDIRYLAVD----AIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEA-IGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y856_STRP3 (UPF0189 protein SpyM3_0856/SPs1056 OS=Streptococcus pyogenes serotype M3 GN=SpyM3_0856 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  259 ALVIKKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            +L +  GDI   +VD    AIVN AN  +LG      G  D AIH  AG  LR AC  +   +      IG+A++T  + LPAS++IHTVGP      +        L   Y++SL +A +  +  +AF +IS G +G+P +EAA +A+ TV
Sbjct:   85 SLFLYHGDIRYLAVD----AIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEA-IGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y1216_STRP1 (UPF0189 protein SPy_1216/M5005_Spy0930 OS=Streptococcus pyogenes serotype M1 GN=SPy_1216 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  259 ALVIKKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            +L +  GDI   +VD    AIVN AN  +LG      G  D AIH  AG  LR AC  +   +      IG+A++T  + LPAS++IHTVGP      +        L   Y++SL +A +  +  +AF +IS G +G+P +EAA +A+ TV
Sbjct:   85 SLFLYHGDIRYLAVD----AIVNAANSELLGCFSPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEA-IGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y1168_STRP8 (UPF0189 protein spyM18_1168 OS=Streptococcus pyogenes serotype M18 GN=spyM18_1168 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  259 ALVIKKGDITKWSVDGSSDAIVNPANERMLG-----GGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS----LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            +L +  GDI   +VD    AIVN AN  +LG      G  D AIH  AG  LR AC  +   +      IG+A++T  + LPAS++IHTVGP      +        L   Y++SL +A +  +  +AF +IS G +G+P +EAA +A+ TV
Sbjct:   85 SLFLYHGDIRYLAVD----AIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEA-IGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
The following BLAST results are available for this feature:
BLAST of FC868909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
Y1252_SULAC1.846e-1838.82UPF0189 protein Saci_1252 OS=Sulfolobus acidocalda... [more]
GDAP2_DANRE3.481e-1737.25Ganglioside-induced differentiation-associated pro... [more]
Y302_STAAW7.756e-1736.18UPF0189 protein MW0302 OS=Staphylococcus aureus (s... [more]
Y302_STAAS7.756e-1736.18UPF0189 protein SAS0302 OS=Staphylococcus aureus (... [more]
Y322_STAAR1.013e-1636.84UPF0189 protein SAR0322 OS=Staphylococcus aureus (... [more]
PAR14_HUMAN1.728e-1635.53Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN... [more]
Y919_STRP63.849e-1637.50UPF0189 protein M6_Spy0919 OS=Streptococcus pyogen... [more]
Y856_STRP33.849e-1637.50UPF0189 protein SpyM3_0856/SPs1056 OS=Streptococcu... [more]
Y1216_STRP13.849e-1637.50UPF0189 protein SPy_1216/M5005_Spy0930 OS=Streptoc... [more]
Y1168_STRP83.849e-1637.50UPF0189 protein spyM18_1168 OS=Streptococcus pyoge... [more]

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Properties
Property NameValue
Genbank descriptionC31006D06EF AbioticL1 Citrus clementina cDNA clone C31006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868909 ID=FC868909; Name=FC868909; organism=Citrus clementina; type=EST; length=695bp
GAGTCAACAAATAGCACGCTTACAAGAAGACTGATACGATTTCTGTTACC
AGCAACGCAACTTCCCCAAGCTACTAATTCTTCAACTTTCCCGAAATCTA
GAACTTCAGTTTCTGACAACTCTCTCGCAACAAGAGCAAAGGCAAAGACG
ATCTCAGTTGGTGATCGTGGTGTTGGTGTTAGAGCTGTGAGTGTGACGAT
GTCGTTATCGAGTGATCAACGAAGCGAGGAGGGTCATTTCAAGTTGTCTG
AATCGGCCGCTCTAGTGATCAAGAAAGGTGATATCACTAAGTGGTCCGTC
GATGGTTCGTCTGATGCCATTGTTAATCCGGCCAACGAGAGAATGCTTGG
AGGTGGTGGTGCAGATGGAGCCATACATAGGGCTGCAGGACCAGAGCTCC
GAGAAGCTTGCTGTAAGGTTCCAGAAGTCCGACCTGAAGTTCGCTGTCCC
ATCGGAGAAGCACGAATTACTCCAGGTTTCAAGTTGCCTGCATCGCATGT
GATCCATACTGTTGGTCCTATCTATGATGCGGATAGTAATCCTGAAGCCT
CTCTGAGAAATGCATACAAGAACAGCTTGAGCGTGGCCAAAGAAAACAAC
ATTCAATACATTGCTTTTACTGCCATCTCATGTGGTGTATATGGATATCC
TTATGAGGAAGCAGCCGCGGTAGCTCTATCTACAGTCCAAGAATT
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