FC868955

Overview
NameFC868955
Unique NameFC868955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  302 SKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            SK+ +  +K+ ++ R+AF T+S+VD L+DGYRWRKYGQKAVKN+ FPRSYYRCT   C VKK+V+R + D  +V+TTYEG H H
Sbjct:   40 SKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSH 123          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  326 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K+++ PRF+F TKS+ D L+DGYRWRKYGQK+VKNS +PRSYYRCT   C VKK+V+R S++ +IV TTYEG H H
Sbjct:   11 KKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNH 86          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 58/103 (56.31%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  272 GSGGKPPEIPSKARK--------KGQKR-IRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            G GG+  E  SK RK         G  R IR+PR    T S+VD L+DGYRWRKYGQK VK +P PRSYY+CT   CTV+K VER+S D   VITTYEG+H H
Sbjct:  441 GGGGEGDESESKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNH 543          

HSP 2 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            EDGY WRKYGQK VK S +PRSYY+CTN  C VKK+VERS E   I    Y+G H H
Sbjct:  273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREG-HITEIIYKGAHNH 328          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  326 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAA 604
            + + +P+    TKSEVD L+DGYRWRKYGQK VK +P PRSYY+CT   CTV+K VER+S D   VITTYEG+H +H V   R G     AAA
Sbjct:  287 RTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKH-NHDVPAARNGTAAATAAA 378          

HSP 2 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGG 580
            +DGY WRKYGQK +K   +PRSYY+CT+  C VKK+VERSS D  I    Y+GQH H      RGG
Sbjct:  167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHERPQNRRGG 231          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  287 PPE---IPSKARKKGQKRIRQ-PRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            PPE   I  K ++  +KR R+ PR AF T+S+ D L+DGYRWRKYGQK+VK++  PRSYYRCT   C VKK+V+R ++DP +V+TTYEG H H
Sbjct:   62 PPENDQIGEKGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 154          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 60/141 (42.55%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  326 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYY---------YHQGVQITQETPGIKQQSHEEELIQL 721
            K IR+PR    T SEVD L+DGYRWRKYGQK V+ +P PRSYY+CT   C V+K VER+S DP  VITTYEG+H             +H+     S   H I P +          + GV I+ + P      H+ +  QL
Sbjct:  362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKH-------------DHDVPTSKSSSNHEIQPRFRPDETDTISLNLGVGISSDGPNHASNEHQHQNQQL 489          

HSP 2 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +DGY WRKYGQK VK S FPRSYY+CT+  C VKK  ER S D  I    Y+G H H
Sbjct:  211 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITDIIYKGTHDH 266          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  296 IPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAA 604
            I   A     + + +PR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT   C V+K VER++ DP  V+TTYEG+H H     P     +H AAA
Sbjct:  380 ISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNH---DLPAAKSSSHAAAA 479          

HSP 2 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +DGY WRKYGQK VK S FPRSYY+CTN  C VKK+VERS  D  +    Y+GQH H
Sbjct:  229 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNH 284          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 54/127 (42.52%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  320 GQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSH 700
            G K +R+PR    T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+S D   VITTYEG+H H        G   + A   +S +         H     + + P   Q  H
Sbjct:  341 GSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYATNRAPQDSSSVPIRPAAIAGHSNYTTSSQAPYTLQMLH 467          

HSP 2 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            EDGY WRKYGQK VK S  PRSYY+CT   C  KK+VERS E   I    Y+G H H
Sbjct:  184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEG-QITEIVYKGSHNH 239          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 2
Query:  317 KGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            KG++ +   R AF T+S+ D L+DGYRWRKYGQK+VKN+  PRSYYRCT   C VKK+V+R ++DP +V+TTYEG H H
Sbjct:   92 KGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 170          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  272 GSGGKPPEIPSKARK-KGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGG 580
            G G    E  ++A++ K ++ +++PR    T S++D L+DGYRWRKYGQK VK +P PRSYY+CT + C V+K VER+ +DP  VITTYEG+H  H +  PR G
Sbjct:  196 GDGKDIGEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKH-KHQIPTPRRG 298          

HSP 2 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +DGY WRKYGQK VK S  PRSY++CT   C  KK+VE S     ++   Y+G H H
Sbjct:  117 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173          
The following BLAST results are available for this feature:
BLAST of FC868955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WRK75_ARATH1.075e-2459.52Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK43_ARATH5.333e-2464.47Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRKY2_ARATH6.965e-2456.31Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK58_ARATH9.097e-2456.99Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK24_ARATH1.188e-2356.99Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK20_ARATH1.188e-2342.55Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY4_ARATH2.027e-2350.49Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK33_ARATH2.647e-2342.52Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK56_ARATH3.457e-2359.49Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK26_ARATH4.515e-2350.00Probable WRKY transcription factor 26 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31007A01EF AbioticL1 Citrus clementina cDNA clone C31007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868955 ID=FC868955; Name=FC868955; organism=Citrus clementina; type=EST; length=721bp
CTGGAAGCTAGGGTCGCCACCGGACGCGGGCTGCGTGAGTTATATTTTGA
GCGAGTTTGGATGGAATCTGCAAGAGCATGAGAGTTCGACCAGCTACTTC
GCTGCTGATCATGAAAGATCCGATTTGGCGGGAAATATCAGCAGCAGTTT
TCCGGCCGAAACTACTACTGACGGTGGCGGTTTGACAAATCCTGGAAGGT
CTGCTGACGTGTCGACTTCGAATCCGTCGGTTTCGTCGAGCTCCAGCGAG
GATCCGACGGAGAAGTCTACGGGCTCCGGCGGTAAACCTCCTGAGATACC
AAGCAAAGCAAGAAAGAAAGGACAAAAGCGAATTCGGCAGCCACGTTTTG
CATTTATGACCAAGAGTGAAGTTGATCACCTTGAAGATGGATACAGATGG
CGAAAGTATGGTCAGAAGGCTGTAAAAAATAGTCCGTTCCCTAGGAGCTA
CTACCGCTGCACAAACAGTAAATGTACAGTGAAGAAGAGGGTGGAACGAT
CATCTGAAGATCCCACCATTGTAATTACTACGTATGAAGGTCAACACTGC
CATCATACCGTTGGATTTCCTCGTGGTGGACTAATTAATCATGAAGCAGC
TGCTTTTGCTAGCCATTTGACTCACGCAATCCCACCATATTATTATCATC
AAGGAGTTCAGATAACCCAAGAAACTCCCGGTATCAAGCAGCAGTCACAT
GAAGAAGAATTAATCCAGTTG
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