FC868955

Overview
NameFC868955
Unique NameFC868955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  326 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAI 631
            + + +PR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT   C V+K VER++ DP  V+TTYEG+H H     P     +H+      H T  +
Sbjct:  396 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDV---PAARTSSHQLRPNNQHNTSTV 494          

HSP 2 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +DGY WRKYGQK VK S FPRSYY+CT+  C VKK+VERS  D  +    Y+GQH H
Sbjct:  250 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHNH 305          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  314 KKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV 562
            KK +K+I+  R AF T+SEV+ L+DG++WRKYG+K VKNSP PR+YY+C+   C VKKRVER  +DP+ VITTYEG H H ++
Sbjct:   91 KKEKKKIKG-RVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHSSM 172          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  302 SKARKKG--------QKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINH 592
            +K RKKG        ++     R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC++  C VKK VERSS D  ++ITTYEG+H H     P G ++ H
Sbjct:  272 AKRRKKGGNIELSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDH---DMPPGRVVTH 373          

HSP 2 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  380 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +EDGY WRKYGQK VK + F RSYYRCT+  C  KK++ERS+    +V T Y G+H H
Sbjct:  110 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSA-GGQVVDTVYFGEHDH 166          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  281 GKPPEIPSKARK--------KGQKRI-RQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            G+  E  SK RK         G  R  R+PR    T S++D L+DGYRWRKYGQK VK +P PRSYY+CT + CTV K VER+S+D   V+TTY G+H H
Sbjct:  329 GEVEESESKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTH 428          

HSP 2 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            +DGY WRKYGQK VK S +PRSYY+CT+  C  KK+VERS E   I I  Y G H H
Sbjct:  178 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEI-IYTGDHIH 233          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  293 EIPSKARKKGQKRIRQPRFAFMTKSEV--DHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFP 571
            E+   +R K +K  +Q   A +++  V  D LEDG+RWRKYGQK V  + +PRSYYRCT++ C  +K VER+S+DP   ITTYEG+H HH +  P
Sbjct:  317 ELDDPSRSKRRKNEKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSP 411          

HSP 2 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  386 DGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFP 571
            DGY WRKYGQK VK S  PRSYY+CT+ KC VKK+VERS E     I  Y+G+H H     P
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEI-VYQGEHNHSKPSCP 226          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  326 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K +++PR    T S++D L DG+RWRKYGQK VK +  PRSYY+CT   C VKK+VERS+ D   V+TTYEG+H H
Sbjct:  309 KGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNH 384          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  272 GSGGKPPEIPSKARKKGQKRIRQP-----RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV 562
            GSG        ++  +G K   Q      R AF T+S++D ++DG++WRKYG+K+VKN+   R+YY+C++  C+VKKRVER  +D   VITTYEG H H ++
Sbjct:   68 GSGSATTLSKKESTNRGSKESDQTKETGHRVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHESL 169          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  293 EIPSKARKKGQKRIRQPRF--AFMTKSEVDH---LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            EI  K   K +KR ++      F TKS +D    L+DGY+WRKYG+K +  SPFPR Y++C++  C VKK++ER + +P  ++TTYEG+H H
Sbjct:   74 EIGDKDEIKKRKRHKEDPIIHVFKTKSSIDEKVALDDGYKWRKYGKKPITGSPFPRHYHKCSSPDCNVKKKIERDTNNPDYILTTYEGRHNH 165          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  383 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGF 568
            +DGY+WRKYGQK++KNSP PRSYY+CTN  C  KK+VERS ++    I TYEG H H+T  F
Sbjct:  114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFHYTYPF 175          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  344 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            R     +S+ D+  DGYRWRKYGQK VK +P PRSY++CTN +C VKK VER +++  +V+TTY+G H H
Sbjct:  294 RIILQMESDEDNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIECRVKKHVERGADNIKLVVTTYDGIHNH 363          
The following BLAST results are available for this feature:
BLAST of FC868955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WRKY3_ARATH7.701e-2348.04Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK50_ARATH7.701e-2359.04Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRKY1_ARATH1.897e-2148.57WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK34_ARATH7.208e-2152.00Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK44_ARATH9.414e-2149.47WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK25_ARATH2.319e-1956.58Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK51_ARATH3.028e-1944.12Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRK59_ARATH2.564e-1845.65Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRK49_ARATH1.272e-1761.29Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK10_ARATH1.662e-1754.29Probable WRKY transcription factor 10 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31007A01EF AbioticL1 Citrus clementina cDNA clone C31007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868955 ID=FC868955; Name=FC868955; organism=Citrus clementina; type=EST; length=721bp
CTGGAAGCTAGGGTCGCCACCGGACGCGGGCTGCGTGAGTTATATTTTGA
GCGAGTTTGGATGGAATCTGCAAGAGCATGAGAGTTCGACCAGCTACTTC
GCTGCTGATCATGAAAGATCCGATTTGGCGGGAAATATCAGCAGCAGTTT
TCCGGCCGAAACTACTACTGACGGTGGCGGTTTGACAAATCCTGGAAGGT
CTGCTGACGTGTCGACTTCGAATCCGTCGGTTTCGTCGAGCTCCAGCGAG
GATCCGACGGAGAAGTCTACGGGCTCCGGCGGTAAACCTCCTGAGATACC
AAGCAAAGCAAGAAAGAAAGGACAAAAGCGAATTCGGCAGCCACGTTTTG
CATTTATGACCAAGAGTGAAGTTGATCACCTTGAAGATGGATACAGATGG
CGAAAGTATGGTCAGAAGGCTGTAAAAAATAGTCCGTTCCCTAGGAGCTA
CTACCGCTGCACAAACAGTAAATGTACAGTGAAGAAGAGGGTGGAACGAT
CATCTGAAGATCCCACCATTGTAATTACTACGTATGAAGGTCAACACTGC
CATCATACCGTTGGATTTCCTCGTGGTGGACTAATTAATCATGAAGCAGC
TGCTTTTGCTAGCCATTTGACTCACGCAATCCCACCATATTATTATCATC
AAGGAGTTCAGATAACCCAAGAAACTCCCGGTATCAAGCAGCAGTCACAT
GAAGAAGAATTAATCCAGTTG
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